Sequence
atgc intronic sequence ATGC exonic sequenceCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtataattaaactttttgaaccctttttagctatggagttagtgtatttaaggatagatctattttgtaccttcatgtattaaatattaatactagcatt...
Basic information
species | Glycine max |
transcript | GLYMA18G03890.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G03890.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 5'ss of exon 4
CTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtata-attaaactttttgaaccctttttagctatggagttagtgtattt-aaggatagatctattttgtaccttcatgtattaaatattaatactagcatt
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CTTCTGGAGGTTAATAGAATGCTCAGAGCCGGCGGTTATTTTGCTTGGGCAGCACAGCCTGTTTATAAGCATGAAGAGGCTCAGCAAGAAGCATGGAAAGgtatgcattatttcctatgtacccctagtaatttttgttccattgtgggggaaacacactagtctttcatttattctgttggtattttcccacatgacga--
upper sequence: GLYMA18G03890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
CTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtataattaaactttttgaaccctttttagctatggagttagtgtatttaaggatagatctattttgtacctt-catgtattaaatatta-atactagcatt
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CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttg--ttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat
upper sequence: GLYMA18G03890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02250.t01 (Vitis vinifera), 5'ss of exon 4
CTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtataattaaactttttgaaccctttttagctatggagttagtg-tatttaaggatagatctattttgtaccttcatgtattaaatattaatactagcatt-----
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CTGCTTGAGGTAAATAGAATGCTTCGGGCAGGAGGATACTTTGCTTGGGCAGCACAGCCAGTTTATAAGCATGAAGAAAACCTAGAAGAACAGTGGAAAGgtatcatt----ttctgggactcttattcaaaata-agctattgatatcttatcaaagaagtaagcc-tattgaaaagttatggtcactttaattacctttttgagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193511024|gb|FK468937.1|FK468937EST: TGCCCAGCCAGTTTATGAGCATGAAGAAGTTTTAGAAGAACAATGGGAAG AGATGCTTAATCTTACCACTCGTCTCTGCTGG
genomic: TGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtataattaa ... ttatctccagAGATGCTTAATCTTACCACTCGTCTCTGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtataattaaactttttgaaccctttttagctatggagttagtgtatttaaggatagatctattttgtaccttcatgtattaaatattaatactagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC