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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGACCTTCAGAAGCCGCAAGTTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAGgtaattgttgttgattgatgttcatgactgaactatcatcttatgcttgctcgctctaattccaaatgtcatcaagattttgttttgtttatccttaatgccatttcattttccttataatttgttgccttattttaggatagctgacagtgatgtgttaactcctttctctacctgtcttgcag

Basic information

species Glycine max
transcript GLYMA18G03830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 4
TGCTGACCTTCAGAAGCCGCAAGTTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAGgtaattgttgttgattgatgttcatgactgaactatcatcttatgcttgctcgctctaattccaaatgtcatcaagattttgttttgtttatccttaatgccatttcattttccttataatttgttgccttattttaggatagctgacagtgatgtgttaactcctttctctacctgtcttgcag
||| ||  | |||||||| ||| | ||||||||||| ||||||||||||| |||||| || | ||| || ||||||   |||||   | |||||   ||||| ||    | || ||  | ||  ||  ||        | |  || ||  | ||    ||| ||||| |      | |  | ||||  |  |  |   ||  |                                                                                  
TGCAGATTTACAGAAGCCACAAATGGAACTTGATGGGAAGGCTTGTGCTGGTGTTGGGCAGAGCAGTCTCATGGCTTACTATGAGACTATGTTTGACCAGgtgatg--cgatgctttttttttttggttg--------tgtcttgattattggcaagcatttcaaatattgatgtgttgcttttttcgtctttttgtgtggtag---------------------------------------------------------------------------------

upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G39800.2 (Arabidopsis thaliana), 5'ss of exon 3
TGCTGACCTTCAGAAGCCGCAAGTTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAGgtaattgttgttgattgatgttcatgactgaactatcatcttatgcttgctcgctctaattccaaatgtcatcaagattttgttttgtttatccttaatgccatttcattttccttataatttgttgccttattttaggatagctgacagtgatgtgttaactcctttctctacctgtcttgcag
||| || ||||||||||| ||   |||||||||||| ||||||||||||| ||||||||||| ||| |||||||||   |||||   | |||||   ||||| ||| ||  |  ||| | |  |   ||  | |||  | | |  | |       | || |    |||   |     ||||  |||| |||                                                                                              
TGCGGATCTTCAGAAGCCTCAGACTGAACTTGATGGGAAGGCTTGTGCTGGTGTTGGACAAAGCAGTCTTATGGCTTACTATGAGACTATGTTTGACCAGgtgatttttcct--ttgttatcgaattctagattattgtgtaagacat-------ccaaatattgatgctgttg---tttttctttggttag---------------------------------------------------------------------------------------------

upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 4
TGCTGACCTTCAGAAGCCGCAAGTTGAACTTGATGGCAAGGCTTGTGCTGCTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAGgtaattgttgttgattgatgttcatgactgaactatcatcttatgc--ttgctc---gctctaattccaaatgtcatcaagattttgttttgtttatccttaatgccatttcattttccttata---at-ttgttgccttattttaggatagctgacagtgatgtgttaactcctttctctacctgtcttgcag
|||||| || || || || |||| ||| |||||||| ||||| ||||| |||||||||||||| | |||||||||||| |||||    || ||||| |||||||      |   ||| | || ||  |||  || | |    | |   ||| |      | |   | | | | ||  | |         ||| |  |   |  ||    || || ||    |||   || |  ||  ||  | ||   ||   |||   | |||   |   |  ||  | | | |    | |||
TGCTGATCTCCAAAAACCACAAGCTGAGCTTGATGGTAAGGCGTGTGCAGCTGTTGGACAAAATAACCTTATGGCTCTCTATGACACATTATTTAGCCAGgtaaagcacataatttgctttttat--ctgttctgtgagtacaggggattgatttgtattttgtcttcgattatctactaatgcgccccttgctagttggttctgttggttgatgttttcaatacacatgtcattctctactcttttaatttttgaatctaatgccctctttttttaattttctttatatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207785677|gb|GD757398.1|GD757398
EST:     CTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAG                         CTGGATGTGACATCTGCTCAGCTTCTTGTGACGGACAATGATTTTAGAGAC
genomic: CTGTTGGACAAAACAGCCTTATGGCTCTTTATGATGTTTTGTTTAGTCAGgtaattgttg ... tgtcttgcagCTGGATGTGACATCTGCTCAGCTTCTTGTGACGGACAATGATTTTAGAGAC