1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTGAGTAACTATTCCTCAATGGAAGGTGTTCTTTACTGTAAGCCTCACTATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgttctttttcttctttgaggatgaagttgtgtttgtgtggtttttgaatcatatgcctctttaattggccatattttcattttgaaca
species | Glycine max |
transcript | GLYMA18G03490.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCA CCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTEST: gi|17021986|gb|BM093020.1|BM093020
genomic: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgtt ... attttgaacaGCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCT
EST: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCA CCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTEST: gi|58017102|gb|CX703844.1|CX703844
genomic: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgtt ... attttgaacaGCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCT
EST: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCA CCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTEST: gi|208318499|gb|GE110728.1|GE110728
genomic: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgtt ... attttgaacaGCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCT
EST: AGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCA CCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCTEST: gi|13251996|gb|BG362899.1|BG362899
genomic: AGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgtt ... attttgaacaGCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCT
EST: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCA CCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCT
genomic: ATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgtt ... attttgaacaGCTGCAAAGCTAGCTGATAAGACAACTCCTGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGTAACTATTCCTCAATGGAAGGTGTTCTTTACTGTAAGCCTCACTATGAGCAGCTCTTCAAGGAGAGTGGCTCCTTCAGCAAGAACTTCCAGTCAcgtatgtgttctttttcttctttgaggatgaagttgtgtttgtgtggtttttgaatcatatgcctctttaattggccatattttcattttgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC