Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatattgttgccttctttaatctctcgccttgtcctctgagattgtattattatataatttttcaacaca

Basic information

species Glycine max
transcript GLYMA18G03340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03340.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G098153_T01 (Zea mays), 5'ss of exon 4
CAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatattgttgccttctttaatctctcgccttgtcctctgagattgtattattatataatttttcaacaca------------------------------
  || || ||  | |||   ||| | ||||| |||||  | |||||| |  | ||     |  | |||||||| ||||||||||| || || ||||||||||||||  ||   |  ||   | | || ||| |||    || |    || |||| |  | | |||| |    ||                               
-GGTAGAGAAGCTCCCCAATGATCTGGAAGGAATGGAGTCCTCAATGGAGAAGCTTTACATTCTTATTGATGAGATCTACAAATACGTCGATGATGTTGTGgtacgg-atctctctctctctcactcactctcctgcatctgtttttttctattttattttgatttatttggacgcgggtgagtaacctccatatgacattgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333945|gb|FK024758.1|FK024758
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGATGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|254317274|gb|GR826219.1|GR826219
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|208339064|gb|GE139288.1|GE139288
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|214003981|gb|DB985250.1|DB985250
EST:     CAACTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCGCCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|26056153|gb|CA799067.1|CA799067
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|151393659|gb|EV263534.1|EV263534
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAAGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|192326353|gb|FK015885.1|FK015885
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAAGGACGAGTGGCACCAGACAACAAAAT
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAA-GGACGAGTGGCACCAGACAACAAAAT
EST: gi|209700663|gb|BW670452.1|BW670452
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCGCCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|21675436|gb|BQ627787.1|BQ627787
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|10709468|gb|BF009192.1|BF009192
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTNGT                         GGAATGACGAGTGGCACCAGACAACANAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|192332673|gb|FK025330.1|FK025330
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAG-ACGAGTGGCACCAGACAACAAA-TCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|209728076|gb|BW655309.1|BW655309
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCGCCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|254317273|gb|GR826218.1|GR826218
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|192295877|gb|FG990901.1|FG990901
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAAGGACGAGTGGCACCAGACAACAAAATC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAA-GGACGAGTGGCACCAGACAACAAAATC
EST: gi|151403386|gb|EV273196.1|EV273196
EST:     CATCCGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|192323135|gb|FK016326.1|FK016326
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|193645433|gb|FK590835.1|FK590835
EST:     ATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: ATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|151410317|gb|EV280132.1|EV280132
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAG
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAA-GGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAG
EST: gi|31466038|gb|CD408066.1|CD408066
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|209713286|gb|BW684373.1|BW684373
EST:     GCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GAAAGGACGAGTGGCGCCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: GCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|209718437|gb|BW666249.1|BW666249
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCGCCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|209705150|gb|BW667782.1|BW667782
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCGCCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|26048921|gb|CA785374.1|CA785374
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
EST: gi|151393162|gb|EV263037.1|EV263037
EST:     CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGT                         GGAAAGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC
genomic: CATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTggtacgatat ... tttcaacacaGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGC