Sequence
atgc intronic sequence ATGC exonic sequenceGACAAGTTCCGCAAAGAACAACCACAAACATGTCACCTCTCTGTGTGAAAGACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAGgttttatataaatctataccacggcttctcagaaggggtaatcttatattaacaatgtctaaatatctaatttgtacattggtag
Basic information
species | Glycine max |
transcript | GLYMA18G02900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G56040.1 (Arabidopsis thaliana), 5'ss of exon 4
GACAAGTTCCGCAAAGAACAACCACAAACATGTCACCTCTCTGTGTGAAAGACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAGgttttatataa-atctataccacggcttctcagaaggggtaatcttatattaacaatgtct-aaatatctaatttgtacattggtag-------------------
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GACAAGTGCTGCAAAGAACAACCATGAGCATGTAAGTTCGCTTTGTGAAAGGCTTAAATGGTTTGGCAGAGGTCAATCAAATTTCCGACTCTTTGAACAGgtatcagggaacatatattttcttttgatttctgttacctttttctggaacaactgtatcttgagtattgtactcaca-gttaatagaatggtttttgttcgctag
upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 4
GACAAGTTCCGCAAAGAACAACCACAAACATGTCACCTCTCTGTGTGAAAGACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAGgttttatataaatctata---------ccacggcttctcag----aaggggtaatcttatattaacaatgtctaaatatctaat-ttgtacattggtag-----------------------------------
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GACAAGTGCAGCAAAGAACAACCACGAACATATCACTTCTCTTTGTGAAAGACATCAATGGTTCGGAAGAGGTCAATCAAGTTTCCAACTTTTTGAACAGgttttatatgaaaccataagaatgaaacttttgctcctttgtgacaaatgaattttttatatttcatttatttattttcttgggattatatgaatatagctgtgaattcattgatttaatttgttaatttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7693119|gb|AW761216.1|AW761216EST: GACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAG CCTCTTGTTCCAGTTGTTGGTGCAGAAGAAGGCCAGTGGCTGGTCACCAAA
genomic: GACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAGgttttatata ... acattggtagCCTCTTGTTCCAGTTGTTGGTGCAGAAGAAGGCCAGTGGCTGGTCACCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACAAGTTCCGCAAAGAACAACCACAAACATGTCACCTCTCTGTGTGAAAGACTTTCATGGTTTGGAAGAGGTCGATCAACTTTCCAATTTTTTGAACAGgttttatataaatctataccacggcttctcagaaggggtaatcttatattaacaatgtctaaatatctaatttgtacattggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG