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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtatatccagtcaatgaaaatctttttcttaaaggttatattattagcaaataacaagtttgctaagaatcttcatcaagaattt...

Basic information

species Glycine max
transcript GLYMA18G02040.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtatatccagtcaatgaaaatctttttcttaaaggttatattattagcaaataacaagtttgctaagaatcttcatcaagaattt
| ||||||||   ||||||||||||||| || ||||||||  |||| || ||||| || |||||  ||||||| || ||||| ||||| || || ||||||| || ||    |    | |   || ||  |||  | ||| | || |  | |||   | | |  | |  ||  ||||  |                    
TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaaacacttgacgagaatgagacatggaagctttttctattta--gctatccaacttgatatttcca--tttgacag-------------------

upper sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtatatccagtcaatgaaaatctttttcttaaaggtta--tattattagcaaataacaagt-ttgctaagaatcttcatcaagaattt
|| |||||||   ||||||||||||||| ||||||||||||||||||| |||||| ||||||||  | |||||||||||||| ||||||||||| ||||||| |    |    |  |   |    |  |  |       | |  | ||  | |  || | ||  |  ||  |     || ||   ||| || |     ||   
TTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCTTGTTGATAAAAGgttatatttatactcattactgtgttggacaattccaagtctggtgaatctcagttacttttgacccatggctttcctttctctcaattttaactgccaa---