Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag

Basic information

species Glycine max
transcript GLYMA18G01110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgt-cctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatactt-ttggttttgctttgc-cacag
 || |  |||    | || || |||||||| ||  | ||||| | ||||||||| | ||||||| | ||| |||||||||||||||||||||| ||||| |||||  |||||       |||  | | | |||| ||      | | |   |    ||| ||  |  ||   ||   |  |  |   ||||  | ||
ACAAGTGAAGTCTCGCCAATCAAATGGGCAGGGCAGGTGGCCTGCCAAATCAGCCAGGTTCATTTTGGATCTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgaacctgttgctagttttcctctcaattttaatggtgacactcttcatatttttttaatatgcttgggctaactaatggtttgttgcgtatag

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G148744_T02 (Zea mays), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
 || ||||||    | |||||||||||||| || ||||||||||| |||||||| | |||||| || |||||||||||||||||||||||||| ||||| ||||| ||| | |   ||| |  ||| | | | |||   |||   |   ||    ||| |      ||| |||| || | || |          
GCAAGCTAAGTCGCGCCACTCCAATGGGCAGGGCCGCTGGCCCGTTAAATCAGCCAGGTTCATCCTGGATTTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgccctctttct-catctt-tttaaatgtgcatgacatttcctactgtttggtttgac-----ttacacttctgttatttccag-------

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
 || || |||    | |||||||||||||| || |||||||| || || ||||| | ||||||  | |||||||||||||||||||||||||| ||||| ||||| ||| | |     ||   ||| |||||     ||   | |   | |   | | |    |  ||  ||||    | |   ||     |||
ACAAGCAAAGTCTCGCCACTCCAATGGGCAGGGTCGCTGGCCTGTTAAGTCAGCCAGGTTCATATTGGATTTGCTGAAGAATGCTGAGAGTAACGCTGATgtatgccctct-tgtctcttccttttcattttaagcgtg--cactcacattt--cctactgtctggtttgacttaacatgtctgttatttccag

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtc-ctgtataagc---atttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
 |||||||||    | ||||| |||||||| ||||||||||| |||||||| ||||  |||||||||||  | || |||||||||||||| |||||||| || |     | ||    |    |  ||  |   ||| | | || | || ||| |  || | |   |||   | | ||   |                 
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctg-taatgttatgctaattatgtgagtttctctgctgcag-----------------

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G119169_T03 (Zea mays), 5'ss of exon 5
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtc-ctgtataagc---atttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
                               ||||||||||| |||||||| ||||  |||||||||||  | || |||||||||||||| |||||||| || |     | ||    |    |  ||  |   ||| | | || | || ||| |  || | |   |||   | | ||   |                 
-------------------------------GGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaattatactgtccctgtcagacctatctttgcttctg-taatgttatgctaattatgtgagtttctctgctgcag-----------------

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
 |||||||||    | ||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||  | || |||||||| ||||| |||||||| || |    |         | |  ||||   | ||| |    | |||  |   |   |  |   | |||||    |   |||  || |||  |||
TCAGGCTAAGTCTCGCCACTCAAATGGTCAGGGACGCTGGCCTGTCAAGTCTGCTAAATTCATTCTAGACCTTCTCAAGAATGCAGAGAGCAATGCTGAGgtctacaat---------tctactttgcgctgtcagagctatctttgcatctataatgtatgctaattatg---tcaattt--ctctgctgcag

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G127521_T01 (Zea mays), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatg----tcctgtataagc-atttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
 |||||||||    | ||||| ||||| || ||||||||||| ||||| || ||||  |||||||||||  | || |||||||| ||||| |||||||| || ||    || | | |  ||  |  ||  |   ||| ||| |   || | || |  || | |   | |   | | ||   |                 
TCAGGCTAAGTCTCGCCACTCAAATGGTCAGGGACGCTGGCCTGTCAAGTCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCAGAGAGCAATGCTGAGgtctgcaattcttctttgcgctgtcagagctatctttgcatcta--taatgtatgctaattatgtcaatttctctgctgcag-----------------

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G126594_T03 (Zea mays), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGC-TGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactt-tcaaagtcattatacttttggttttgct----ttgccacag-----
     |     ||||    | |  |  | |||     |  | |  |||  |    |  | | ||   ||| || |     |     ||   |   | |   | | ||  |||    |  || |      |  |     | | | |    | |||| |  |||  | |  |   || |    | ||||    |      ||     
---CACGTGAGACAGCTTTTGCCCTTAGGAAG--TTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCGTTCCGCAGgtattgtggtggtgttgggcgcactgctcaggctaagtctcgccactcaaatggtcagggacgctggcctgtcaagtctgctaaattcattctagacctt

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G67430.2 (Arabidopsis thaliana), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttg---atttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag------
 || ||||||||||| ||||| ||||| |||||||| ||||| | ||| || ||| ||||  |||| |||||||| ||||| |||||||| |||||||| ||  | |  | ||   ||||| |||     |  |||    || || | |     |   |||   | | |  ||| |||||  ||||  |   ||         
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcat--tcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcata-ttttgactttgaatgttcaggtgaaagg

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttg---atttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag
 || ||||||||||| ||||| ||||| |||||||| ||||| | ||| || ||| ||||  |||| |||||||| ||||| |||||||| |||||||| ||  | |  | ||   ||||| |||     |  |||    || || | |     |   |||   | | |  ||| |||||  ||||  |   ||   
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcat--tcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcata-ttttgactttgaatgttcag--

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 5'ss of exon 5
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtca-ttatacttttggttttgctttgccacag-------------
 ||||| |||||||| || || |||||||||||||||||||| |||||||| ||||| | ||| ||||||||||| |||||||| |||||||||||||| ||||||  |   |   | ||     ||  || ||   |  ||||||  || |   ||| | ||  |  | || || | |   |   |    |  |             
TCAGGCAAAGAACAGGCATTCAAATGGGCAAGGACGCTGGCCTGTCAAATCTGCTAAATACATCCTAGATTTGCTTAAGAATGCCGAGAGTAATGCTGATgtatgtatttcgttgcccttcaccatgtattctcggct--ttatttatagccccttttgatagatagctttatttattgcccttactaataaatgtcaattcttacag

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 3
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttg--atttgatttttcatatgattat--tttaagtcaactttcaaa-gtcattatacttttggttttgctttgccacag
 ||||| |||||||| || || ||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||  |  ||   | ||    || |  | | |  | ||  |||  ||  |   ||||   ||| ||||  || |||   |                
TCAGGCAAAGAACAGGCATTCGAATGGACAAGGACGCTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgtatgtattcaattgcccttcaccatgtattctctgctttgtctataattccaactaactaataaatgtca--attcttacag----------------

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S22_76V6.1 (Physcomitrella patens), 5'ss of exon 4
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataa-gcatttgatttgattttt------catatgattattttaagtcaactttcaaagtcattatactt--ttggttttgctttgccacag---------------
 |||||||||    | || |||||||| || ||||| |||||||| || |||||||  ||  | || ||||||||||||||||| ||||| ||||| || || ||||    | ||   |||  | |||| | ||        | | ||  |||| |   |||| ||    ||   ||   |  |||  |    | | |  |                 
ACAGGCTAAGGCACGCCATTCCAATGGACAGGGACGTTGGCCCGTGAAGTCAGCTACCTTTTTGCTGGATTTGCTGAAGAATGCCGAGAGCAATGCGGAGgtgtgtctgaaagaatatattaaaattgactattggaagatgtgtaatctttttga--taactctcgtgatctagatgtctgattgagtggcttattctgcgattttgagtattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011275|gb|BG726206.1|BG726206
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|305377802|gb|HO652033.1|HO652033
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192318954|gb|FK009034.1|FK009034
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|151411461|gb|EV281272.1|EV281272
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|20814017|gb|BQ298495.1|BQ298495
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|15815139|gb|BI787414.1|BI787414
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|120529639|gb|EH257773.1|EH257773
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192330707|gb|FK022320.1|FK022320
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192297172|gb|FG988268.1|FG988268
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|22932992|gb|BU550131.1|BU550131
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192318955|gb|FK009035.1|FK009035
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTTTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|6072248|gb|AW101635.1|AW101635
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|14126219|gb|BG790657.1|BG790657
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|37994714|gb|CF806336.1|CF806336
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|21888291|gb|BQ741504.1|BQ741504
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|209706839|gb|BW653131.1|BW653131
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|16282501|gb|BI945051.1|BI945051
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|151394964|gb|EV264835.1|EV264835
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|17021507|gb|BM092541.1|BM092541
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|298172778|gb|HO020332.1|HO020332
EST:     CAACTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|209706840|gb|BW653132.1|BW653132
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|22540234|gb|BU090077.1|BU090077
EST:     CAGTTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|13788209|gb|BG650801.1|BG650801
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192298114|gb|FG991394.1|FG991394
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|254320686|gb|GR827135.1|GR827135
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|9258634|gb|BE346781.1|BE346781
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCTATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192322932|gb|FK016663.1|FK016663
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|22525186|gb|BU083997.1|BU083997
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|192330708|gb|FK022321.1|FK022321
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|21256455|gb|BQ453343.1|BQ453343
EST:     GTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: GTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|9901461|gb|BE610429.1|BE610429
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTTTGTACATTCCTCATATCCAAGGTTAA
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCA-GGTTAA
EST: gi|13181069|gb|BG352409.1|BG352409
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|6566102|gb|AW233862.1|AW233862
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|21887436|gb|BQ740649.1|BQ740649
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|37994771|gb|CF806360.1|CF806360
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
EST: gi|6725501|gb|AW309900.1|AW309900
EST:     CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAA                         GTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT
genomic: CAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctg ... tttgccacagGTGAAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttgatttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG