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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgttaacataatccgggtagatgtttaagatgcatttattttatccttttaactttgtgtatttgaagcctgtttattacccgtgtgatttaac...

Basic information

species Glycine max
transcript GLYMA18G00590.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00590.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 4
TGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt--aacataatccg----------ggtagatgtttaagat---gcatttattttatcctttt----aactttgtgt---atttgaagcctgtttattacccgtgtgat-ttaac------------------------------
 |||||  |||| |||| ||||||  |||| |||  |||||||| ||| ||||||| ||||||| |||| |||||||||||||| ||  ||||||||||||| |||| |   || |||||||           | |   || ||||||    |||  |  |  ||  ||||    || ||||  |   |||   | | | | | ||| | || |  | |  ||                              
AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttggaaatataatccaccattgctttgctttttggttaagaaatagcaaatgctacatttttttctctaattttgcatgttattatgaccatatgtgttaacggtttactatctacatgtgtatcttcaatctttcttgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193708578|gb|FK644536.1|FK644536
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTG
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTG
EST: gi|192321462|gb|FK011748.1|FK011748
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|308098167|gb|HO761338.1|HO761338
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|6454871|gb|AW185620.1|AW185620
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGGTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|208059645|gb|GD860349.1|GD860349
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|10847443|gb|BF070130.1|BF070130
EST:     GGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: GGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|254328939|gb|GR833311.1|GR833311
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|209724301|gb|BW662914.1|BW662914
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGCCCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|254318556|gb|GR832724.1|GR832724
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|192321461|gb|FK011747.1|FK011747
EST:     AACTGAGACAAACAATGGA-CTTGGTGATTCAGGGCTTATA-CCTTAGAG                         ATAAGG-TTTTGCATGATCCTGCTAAAGATACAGG-TTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|308098505|gb|HO760246.1|HO760246
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|193687270|gb|FK629125.1|FK629125
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|207810533|gb|GD781642.1|GD781642
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|19269932|gb|BM886188.1|BM886188
EST:     GGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
genomic: GGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCA
EST: gi|151410035|gb|EV279843.1|EV279843
EST:     AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAG                         ATAAGGTTTTT
genomic: AACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt ... ctaaatgcagATAAGGTTTTT