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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATACTCAGACTAGGCTCTTGCTTTCTAGATCACGTATCACTCATCAGGACCACCCTTTGAGTCTTGTCAAGACCAGCATATGGAATCAGTTCTTCCAGgtactactatctctattatgctatcacctacttacaacacacactttatgcctctctttctttctttgtcttag

Basic information

species Glycine max
transcript GLYMA18G00430.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00430.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 4
TCATACTCAGACTAGGCTCTTGCTTTCTAGATCACGTATCACTCATCAGGACCACCCTTTGAGTCTTGTCAAGACCAGCATATGGAATCAGTTCTTCCAGgtac-tactatctctattatgctatcacctacttacaacacacactttatgcctctctttctttctttgtcttag--------------------------
| |  || |    ||   | |||| || ||||||   |||||||||   || || |||||||| ||||  ||||||||||| |||||||||||||||||||||| ||  |  |    | ||||   |  | ||   |  |  ||   ||      |      |||| |||   |                           
TAAATCTGAAGGCAGTGGCATGCTCTCAAGATCAGAAATCACTCATGGAGAGCATCCTTTGAGCCTTGGAAAGACCAGCATCTGGAATCAGTTCTTCCAGgtacatatcaagtgacatttgctggaaagttctcttag-atgcatgctaaagtgataagatgttctatgttaaatattttataattacggtgtgagtattg