Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga...

Basic information

species Glycine max
transcript GLYMA17G37730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatggga-ttgttgatgttgatgttgatgttga-
 |||||||| || || || |||||||| |||||||| || ||||| ||||| |||||||||||||| ||||| ||||| || || ||||| |||||||||||     |  | | |||       |   | | || |  || ||    ||    |    ||| |   |||        ||  | ||||| | |  || ||  | 
TGAGTTGGCATACTTGGAATGCATCCACTTGTTTGTCGAGATATTAGATCATTTCTTCAGCAATGTGTGTGAACTCGACTTAGTATTTAATTTCCACAAGgt--aacagctatttctcaacaggctattcctgtatcagtatgacaattatgatac-tcatgatccaattgcactcctttctcatgtttaagcagaagtgaaa

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G052713_T01 (Zea mays), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga
 || ||||| || || || || |||||| ||||||| || |||||||| || |||||||||||||| ||||| || ||||| || ||||| |||||||||||   || || ||    |    |       |  | |    |  ||   | | ||||| | |   | | || ||   ||     |      |  | |    |
CGAATTGGCATACTTGGAATGTATCCATCTGTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAACTTGATTTAGTATTTAATTTCCACAAGgtaactttatgcttcactaggctaatctagcaatctgcaataattcaatactttttatcttttcaca-tcttgtatttaaactttaaagagcagtttccaa

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: AC195874.2_FGT002 (Zea mays), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga---
 || ||||| || || || ||||| || |||||||| || |||||||| || ||||| |||||||| |||||||||||||| || ||||| || ||||||||      ||||| |||| |  ||  ||     |  |  ||  || |||| |    |      |   ||| | || || |  |||   |  |     ||||   
TGAATTGGCATACTTGGAATGCATTCACTTGTTTGTCGAGATATTGGACCATTTCTTTAGCAATGTTTGTGAGCTCGATTTAGTGTTTAATTTTCACAAGgtaca--gattctttcttttccttgttaccttataat-attctttgcttgtagcacaattgtgatccatctttgggttttccatga-aacatacggtttgatta

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G47830.1 (Arabidopsis thaliana), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttg-atgttga-----
 |||||||| || || ||| | ||||||||||||||||| |||||||| || |||||||||||||| |||||||| |||||||| ||||| |||||||||||    | |  |||| | |||  || ||| |  |||    | | |||| | | |    | |   ||  ||||   | | |   |  ||||| || |     |     
TGAGTTGGCTTACTTGGAGAGTATCCATTTGTTTGTGGAGATATTGGACCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGgt--acttaacctctttacttactcttatcctttgta-aatagcttctggaactgcttcgttggat--tcat--aactttaagttgtgatgctgtacaacaactggt

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 5
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttc--ttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga
 |||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||| ||   |    ||  |  |  || |   |  |   || |  ||    | | |  ||||  |||  |   ||||| | |  |||   ||||  |  
TGAGTTGGCATATTTAGAGTGCATCCATCTGTTTGTGGAAATACTGGATCATTTCTTCAGCAATGTGTGCGAGCTAGATTTGGTATTTAATTTCCACAAGgtttgttacttgattagcgtttcttgtccactggaataataccttccaattctcatgtgctgtcaaggaattctttaattgtagcttatga--ctgattctt-

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgt-taattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgt-tgatgttga--
 ||||| || ||||| |||||||||||| | ||||| || |||||||| || |||||||||||||| |||||||| |||||||| |||||||| ||||||||| ||  |||| |   | ||| ||  | |   ||  |   ||||       | || |     ||||    || |  |  ||  |    || | | || ||||  
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttt-tctggttctgaattgtcct----aattgaatgataaatggatattgcctacttatttcatatctgttattttgaac

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S250_15V6.1 (Physcomitrella patens), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttg-ttaattctctcttcttgtt-cctataccgtgtttgttt--gtttcttgcattttaccatcaaataat---catgggattgttgatgttgatgttgatgttga-----------------------------------------------------------------------
 ||| |||| ||| | ||  |||| |||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||| || ||||||||||||||||  ||   | |||  |||||     |  | | |   |  |   | || |||||   || | |  |    |   |||     | |   | || |  || ||| ||                                                                        
CGAGCTGGCCTATCTTGAAAGCATTCATTTGTTTGTGGAGATATTGGACCATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgcgtttcttctcttgacatttggaacatacgtcatcaagctttttgcacagtaacttacatctgttgacatctagatctccgtattaagattcatggtggattgtaggatgcatgtcgaatgtttgtattgtggtggtgtgaaaataacgttttcatgctatggttgacag

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S220_70V6.1 (Physcomitrella patens), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGttt--gttaattctctcttcttgttcctataccgtgttt-gtttgtttcttgcattttaccatcaaataatcatgggattgtt--gatgttgatgttgatgttga--------------------------------------------------------------------------
 ||| |||||||| | ||  | || |||||||||||||| ||||||||||| || || ||||| ||||||||||| ||||||||||| || ||||| |||||    |    |  | |||||| |    |    | |||   || | | | ||  ||   |        |   | |||   |     ||||| |    |    |  |                                                                          
CGAGCTGGCGTATCTTGAAAGTATTCATTTGTTTGTGGAGATATTGGATCATTTTTTTAGCAACGTCTGTGAGCTGGATTTGGTTTTCAATTTCCATAAGgtacacgcgcgtcgtttcttctggcatttgacgcatgtgcagtctatatattcgataacaatgcatcgtgcacctggatgtacccggatgtaggcaatagaatctatcgtggattatatgacgctttttagtgtttgttttcaagtgtgtaagaatgacaccattttcatctactgacag

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ09792 (Selaginella moellendorffii), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga
 ||| |||| ||  | ||| |||||||  | |||||||| ||  | || || ||||||||||| || || ||||| ||| ||||||| |||||||||||||   |||  ||  ||    || ||  | | ||| || || | ||| |  ||| |  | |  |   |  |   |   ||   |                   
CGAGCTGGCCTACCTCGAGAGCATCCACCTCTTTGTGGAGATCCTAGACCATTTCTTCAGCAACGTTTGCGAGCTAGATCTGGTTTTCAACTTCCACAAGgccagtttctttccttgcttttttattctcccg-gtctggt-gttgcaagcactc-agcgcctgctggtttcgt--ttacag-------------------

upper sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ11600 (Selaginella moellendorffii), 5'ss of exon 4
-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga
 ||| |||| ||  | ||| ||||| |  | |||||||| ||  | || |||||||||||||| || || ||||| ||| ||||||| |||||||||||||   |||  ||  ||    || ||  | | ||| || || | ||| |  ||| |  | |  |      |   |   ||   |                   
CGAGCTGGCCTACCTCGAGAGCATCTACCTCTTTGTGGAGATCCTAGACCACTTCTTCAGCAACGTTTGCGAGCTAGATCTGGTTTTCAACTTCCACAAGgccagtttctttccttgcttttttattctcccg-gtctggt-gttgcaagcactc-agcgcctgccggtttcgt--ttacag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196591|gb|HO041334.1|HO041334
EST:     CTTCTTCAGCAATGTCTGCGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|31474478|gb|CD416506.1|CD416506
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGANACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|120494113|gb|EH222280.1|EH222280
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|151412034|gb|EV281845.1|EV281845
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|16345364|gb|BI970959.1|BI970959
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|12773437|gb|BG238364.1|BG238364
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAGACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|12773864|gb|BG238791.1|BG238791
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGACACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|298170230|gb|HO018854.1|HO018854
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|298167144|gb|HO010583.1|HO010583
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATT
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATT
EST: gi|38193189|gb|CF922395.1|CF922395
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|21602650|gb|BQ612981.1|BQ612981
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|8283304|gb|BE020865.1|BE020865
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|6666885|gb|AW278344.1|AW278344
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|7795478|gb|AW780875.1|AW780875
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAGGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|15200385|gb|BI424322.1|BI424322
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|31312367|gb|CD397570.1|CD397570
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|17519104|gb|BM188146.1|BM188146
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|20448913|gb|BQ253037.1|BQ253037
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|17153474|gb|BM143407.1|BM143407
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|120494291|gb|EH222458.1|EH222458
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|192322713|gb|FK014404.1|FK014404
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGGAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|13478215|gb|BG507779.1|BG507779
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|120494235|gb|EH222402.1|EH222402
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|151412841|gb|EV282653.1|EV282653
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|10236137|gb|BE804955.1|BE804955
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAATCAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|209699340|gb|BW664059.1|BW664059
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|192297663|gb|FG989582.1|FG989582
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|26269345|gb|CA820408.1|CA820408
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|298169760|gb|HO021120.1|HO021120
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGGTTCGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|298187150|gb|HO034299.1|HO034299
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|31462386|gb|CD404414.1|CD404414
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: gi|9204083|gb|BE330307.1|BE330307
EST:     CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG                         TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgttgatgttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcttc