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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGGTTTATCCGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAggtgattacttttcactgtactacttggtctttggcctctattgtatgtgttttggcagcattgtcacctaagtatccacattttcttttggtggaagtgtgttttgaggagccatggtttatagttttgtatctgatcaatttcttctcaattcttgtctccca

Basic information

species Glycine max
transcript GLYMA17G37220.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 4
TTGGTGGTTTATCCGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAggtgattacttttcactgtactacttggtctttggcctctattgtatgtgttttggcagcattgtcacctaagtatccacattttcttttggtggaagtgtgttttgaggagccatggtttatagttttgtatctgatcaatttcttctcaattcttgtctccca-
  ||||| ||||| ||||| ||  | ||| | ||||||||||||||  ||||||| ||||||||||| |||||  || ||||||||||||||||||| |||||||||       ||| ||  | ||| |  ||   || ||| || |||  |      |||||||||  | |||    |    | ||  |||||| |   |     ||   |   |  ||| |  ||   ||  | |  | | ||||     || || | |  || 
-GGGTGGGTTATCAGATCAAATCCGAGAACTCAGGGAATCAATTGAGCTACCTCTAATGAATCCTGAACTCTTTCTTAGAGTTGGAATTAAACCTCCCAAGgtgatt----catacttta--atttgttagttattctgtatggtctgttct------gcattgtcaattgagt---tagccatcctagtggtggtaacat-----gaatggattttattttt--ttccttaattaaaaagtctcttaaattttatttttttgcag

upper sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S13_419V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGGTGGTTTATCCGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAggtgattacttttcactgtactacttggtctttggcctctattgtatgtgttttggcagcat-tgtcacctaagtatccacattttcttttggtggaagtgtgttttgaggagccatggtttatagttttgtatctgatcaatttcttctcaattcttgtctccca
 ||| ||  ||   || || ||  | ||| |  | || |||||||| || || || ||||| |||||||||||| |||||||||| ||||| ||||| |||||   || |   |  |||  ||||   ||  ||   |  |||       |    |   |||   ||   |  |     || |  |    |  |     ||                                                                 
-TGGAGGACTAAGTGACCAAATTCGAGAACTTCGTGAGTCAATTGAGTTGCCGCTTATGAACCCTGAGCTCTTCCTTCGAGTTGGCATTAAGCCTCCAAAGgtacctattggcctgtgttttactacctcgctgattttgatttagcaactgccagtgacatgcatcttttgtgacgttacgtcctacccttatttccatg-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279081|gb|BI943248.1|BI943248
EST:     GTTGGAATTAAACCTCCTAA                         GGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAG
genomic: GTTGGAATTAAACCTCCTAAggtgattact ... ttgtctcccaGGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAG
EST: gi|192308350|gb|FK001336.1|FK001336
EST:     CCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAA                         GGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAG
genomic: CCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAggtgattact ... ttgtctcccaGGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAG
EST: gi|16281445|gb|BI944491.1|BI944491
EST:     CCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAA                         AGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGGTAGCTAG
genomic: CCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAggtgattact ... ttgtctcccaGGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAG