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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGgtgacaaggatgtttaatgaaagcaaccattctatcttgctaataaaatctgtttgaagtttgctaaaatggttgagttgattttttttctttag

Basic information

species Glycine max
transcript GLYMA17G36380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G36380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g11240.t01 (Vitis vinifera), 5'ss of exon 4
GTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGgtgacaaggatgttt------aatgaaagcaaccattctatcttgctaataaaatctgtttgaagtttgctaaaatggttgagttgattttttttctttag-
 ||| |||| ||||||||||||||||  ||| ||||| ||||| ||  | |||||||||||||| || |||||||| || || |  || || |||||||||| | |   ||||||      |||| || |    |||| |  |   |   || | |    |  | | |  ||     | ||   |  |||  |    |||  
TTGATCATTTTGGAGCTATGACAGAAAATGTAGTTCGAAATTTCACCCGCCATATTCTCTCTGGGTTGGCTTACTTGCACAGCACAAAGACAATCCACAGgtaagagtcatgtttgattagaatggaaactctgattcaacttctttgtcaacaaccacct--actgtagtatgtaagctgcagtattttaatagtattata