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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAATgtagtcattactctccttcatccatttttttttaatatatgtagttgtggcatttgtattgtcttgcttatcctttttttcacttgtttgaaacag

Basic information

species Glycine max
transcript GLYMA17G34380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 3
CAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAATgtagtcattactctccttcatccatttttttttaatatatgtagttgtggcatttgtattgtcttgcttatcctttttttcacttgtttgaaacag
 ||||| |||||||||||||||||||| ||||| ||||||||||| ||  | ||  || |  |  ||||  |||| | ||       ||| |  |  | ||| |||  || | ||   |||  | |  | |     |  || |  ||  | |   |||||| ||  ||
TAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGTgtactgat-------ctttaagctctctttgttatcatttttatcagtgtgagtcatttaagagtaattgttattactatgttttgttt-aattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207731452|gb|GD708479.1|GD708479
EST:     GATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAAT                         TGACCTCAGAGAAAACAGGTTATCAGGGCAGATACCAGATGAGATTGGTGA
genomic: GATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAATgtagtcatta ... tttgaaacagTGACCTCAGAGAAAACAGGTTATCAGGGCAGATACCAGATGAGATTGGTGA
EST: gi|207691301|gb|GD673099.1|GD673099
EST:     GATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAAT                         TGACCTCAGAGAAAACAGG
genomic: GATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAATgtagtcatta ... tttgaaacagTGACCTCAGAGAAAACAGG