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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGACTCTACTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGGgtatgctctttattttattggacaatgtttattgttgtgaatgccacatgttttcttgtgcttactttgttgaaatacacag

Basic information

species Glycine max
transcript GLYMA17G34020.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620512|gb|DB959212.1|DB959212
EST:     CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGG                         AGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGGCTTTTACTGTCAAG
genomic: CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGGgtatgctctt ... aaatacacagAGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGGCTTTTACTGTCAAG
EST: gi|213598705|gb|DB964271.1|DB964271
EST:     CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGG                         AGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGG
genomic: CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGGgtatgctctt ... aaatacacagAGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGG
EST: gi|213599111|gb|DB962218.1|DB962218
EST:     CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGG                         AGCAAGGGAG-AGAAGTATTTTATTCACAACCATTTGGCTTTTACT
genomic: CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGGgtatgctctt ... aaatacacagAGCAAGG-AGGAGAAGTATTTTATTCACAACCATTTGGCTTTTACT
EST: gi|209718610|gb|BW674736.1|BW674736
EST:     CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGNG                         AGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGGCTTTTACTGTCAAG
genomic: CTGTTTATCAACTCGGTTTCCATGTTGGACTCAAAGGGCTGTATAGTGGGgtatgctctt ... aaatacacagAGCAAGGAGGAGAAGTATTTTATTCACAACCATTTGGCTTTTACTGTCAAG