1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTAGTGGCAGAGCTTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAGgtgagttgtattttaatattaataattacattttcatgttaatttcaatccttcaagtggatacaacatcaactttaagcaaataagtttcgagtgattt...
species | Glycine max |
transcript | GLYMA17G33950.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAG GAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTATEST: gi|20075375|gb|BQ094158.1|BQ094158
genomic: TTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAGgtgagttgta ... caatgagcagGAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTAT
EST: TTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAG GAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTATEST: gi|151394949|gb|EV264820.1|EV264820
genomic: TTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAGgtgagttgta ... caatgagcagGAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTAT
EST: TTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAG GAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTATEST: gi|207778708|gb|GD746709.1|GD746709
genomic: TTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAGgtgagttgta ... caatgagcagGAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTAT
EST: TGTTAGGCTGTATCACTCACTCAATGAAG GAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTAT
genomic: TGTTAGGCTGTATCACTCACTCAATGAAGgtgagttgta ... caatgagcagGAAATACTGACGAAGCTGAACAGTTTTTCAAAACATTATATTCATTTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGTGGCAGAGCTTTCTGTTCTGGTGCAGATGTTGTTAGGCTGTATCACTCACTCAATGAAGgtgagttgtattttaatattaataattacattttcatgttaatttcaatccttcaagtggatacaacatcaactttaagcaaataagtttcgagtgattt
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - CAGATG