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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATGGTGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatttcctgcctatgatatagcatcatgatcccttagcctgatgttctccaacttgataaattctgagaataactattttttcccctcctgccaaactgtttttctccacag

Basic information

species Glycine max
transcript GLYMA17G33690.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G33690.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 4
GCCATGGTGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatttcctgcctatgatatagcatcatgatcccttagcctgatgttctccaacttgataaattctg-agaataactattttttcccctcctgccaaactgtttttctccacag
| ||||| ||||| ||||| || || ||||| |||||||| || || || ||  ||||||| ||||| || ||||| ||||| |||| | |||||||||||||     ||    ||| | |||| |            |||||| |||| |     | |  ||| |    | |   |  ||| || |  |  |         ||| |  ||  | |||
GACATGGAGGTGCACGTGCAGCTGAATATGTGAAGCAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATACCACAGCTGCAATAGgtgc-----ttttcacctttaatattg------------ttagccagatgattc---aataaatagacctagcaaggtgcctaattctgactttttcatttgcctgctcctcatctcag

upper sequence: GLYMA17G33690.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
GCCATGGTGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatttcctgcctatgata-tagcatcatgatcccttagcctgatgttctccaacttgataaattctgagaataactattttttcccctcctgccaaactgtttttctccacag
| ||||| |||||||| || || || ||||| || |||||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||| || ||||||   |  ||||||| || ||  | ||   |||   | |  |||||||      |   |  || |  | ||| |  |  ||| | ||      ||||    |  ||             
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgt---ttgtttcctgactgtgccagtaatgtcact-ttctatagcctg------tatgaagtg-ttcactctaaatactactgtcttaaattatcctctgtacatgcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098639|gb|HO760380.1|HO760380
EST:     CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG                         CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatt ... ttctccacagCTGATGCATATAACCACACCGACTCTGAATTTCTGAAATCTGAAAATAATC
EST: gi|298177029|gb|HO023390.1|HO023390
EST:     CAATTTGATCAGTCATCCTAAATCCATTTCTGACACCAAATCTGCAATAG                         CTGATGCATATAACCACACCGACTCTGAATTTCTGAAACCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatt ... ttctccacagCTGATGCATATAACCACACCGACTCTGAATTTCTGAAATCTGAAAATAATC
EST: gi|27427212|gb|CA938732.1|CA938732
EST:     CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG                         CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatt ... ttctccacagCTGATGCATATAACCACACCGACTCTGAATTTCTGAAATCTGAAAATAATC
EST: gi|151406983|gb|EV276798.1|EV276798
EST:     CAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAA                         CTGATGCATATAACCACACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatt ... ttctccacagCTGATGCATATAACCACACCGACTCTGAATTTCTGAAATCTGAAAATAATC
EST: gi|15662272|gb|BI699643.1|BI699643
EST:     CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG                         CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatt ... ttctccacagCTGATGCATATAACCACACCGACTCTGAATTTCTGAAATCTGAAAATAATC