1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAATTTTGCGCAAGAGAAGAGCAGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaattcaatgtgtacattacatcatgcttttggaaaaagcttttaagaattatttgattcttaactaacgaagtccttgtaag...
species | Glycine max |
transcript | GLYMA17G32980.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACC GAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAGEST: gi|15000493|gb|BI321307.1|BI321307
genomic: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttga ... ttgttttcagGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAG
EST: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACC GAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAGEST: gi|192323926|gb|FK018647.1|FK018647
genomic: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttga ... ttgttttcagGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAG
EST: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACC GAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAG
genomic: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttga ... ttgttttcagGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACTGGGTTGCAATTAAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATTTTGCGCAAGAGAAGAGCAGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaattcaatgtgtacattacatcatgcttttggaaaaagcttttaagaattatttgattcttaactaacgaagtccttgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaag