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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACTGCACTTTTCACAATAAACTGGAAATGGTGGCTAGCAAGACTGTTTATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGAgtaagattgctttcactgtaaatcctccaacatttgatataaaagaaattattgtcctcaatatttttaacatctctgcttttgtgctttgattgatccttttccatttgtccag

Basic information

species Glycine max
transcript GLYMA17G31400.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193329457|gb|FK296023.1|FK296023
EST:     TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGA                         CCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
genomic: TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGAgtaagattgc ... atttgtccagCCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
EST: gi|21677506|gb|BQ629857.1|BQ629857
EST:     TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGA                         CCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
genomic: TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGAgtaagattgc ... atttgtccagCCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
EST: gi|23725439|gb|BU760673.1|BU760673
EST:     TGATCTACACTGACCTCTCACCTATAACGCCATCATTGACAATGTTCTGA                         CCGAGGCAAGGGGGATGGTAAATCCAAAGTTATTTCTGGAAACTATCTACC
genomic: TGATCTACACTG-CCTCTCACCTATAACGCCATCATTG-CAATGTTCTGAgtaagattgc ... atttgtccagCCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
EST: gi|24206217|gb|BU965470.1|BU965470
EST:     TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGA                         CCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
genomic: TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGAgtaagattgc ... atttgtccagCCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
EST: gi|21995121|gb|BQ786649.1|BQ786649
EST:     TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGA                         CCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC
genomic: TATGATCTACACTGCCTCTCACCTATAACGCCATCATTGCAATGTTCTGAgtaagattgc ... atttgtccagCCAAGGCAAGGAGGATGCTAAATCCAGAGTTATTTCTGGAAACTATCTACC