Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtttcatcttattttgtgcttgtttatcgctgttgccttttattcacatcacatttagttttcttgcaatagaatttaaaccatcaagtatgc...

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401073|gb|EV270887.1|EV270887
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGGCTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|14259240|gb|BG882148.1|BG882148
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|151412705|gb|EV282517.1|EV282517
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|298190184|gb|HO032305.1|HO032305
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|151396592|gb|EV266469.1|EV266469
EST:     CTTTACAATGGATCGCTGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|23064041|gb|BU578814.1|BU578814
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|5753671|gb|AI960958.1|AI960958
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|207845484|gb|GD814073.1|GD814073
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|11687742|gb|BF595418.1|BF595418
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|298179735|gb|HO024950.1|HO024950
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|298197455|gb|HO044934.1|HO044934
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|151402880|gb|EV272693.1|EV272693
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTACTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|27424702|gb|CA936222.1|CA936222
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|6482381|gb|AW201644.1|AW201644
EST:     TTTACAATGGATCGCCGCTTAGCCCGTT-GGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: TTTACAATGGATCGCCGCTTAGCC-GTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|11412862|gb|BF424873.1|BF424873
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
EST: gi|33390191|gb|CA853398.1|CA853398
EST:     CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG                         TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG
genomic: CTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAGgtgggtagtt ... tgtgttgcagTGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG