1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAAGAAAAGATACTGGTTCTTGTAGATACTTGGCAAGAAGCTTTTGGAGGCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgtttattataaagttttaaacatagagatttttgttgccaagttttcctcttgccattgtgaaaatgaaggaaagctgttcactagagcaatcaa...
species | Glycine max |
transcript | GLYMA17G26440.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTG CGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCEST: gi|193552765|gb|FK507002.1|FK507002
genomic: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgttta ... tttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
EST: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTG CGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCEST: gi|16105990|gb|BI893730.1|BI893730
genomic: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgttta ... tttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
EST: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTG CGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
genomic: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgttta ... tttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGAAAAGATACTGGTTCTTGTAGATACTTGGCAAGAAGCTTTTGGAGGCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgtttattataaagttttaaacatagagatttttgttgccaagttttcctcttgccattgtgaaaatgaaggaaagctgttcactagagcaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatga