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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTGTATTGGGAGCAGTGGTATATTAATCTGAATGTGGCCCAGCATCCGAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgattgctctgttcgtcaaactaaatctcttttcatgtttcactcctactgtgaatttacctgttttcctgtgtttcttacaagtag

Basic information

species Glycine max
transcript GLYMA17G21590.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589649|gb|AW705419.1|AW705419
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAA                         AGGGAGCATTGGAGGAT
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGAT
EST: gi|15204778|gb|BI427546.1|BI427546
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|33387938|gb|CA851145.1|CA851145
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCGGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|42722958|gb|CK768857.1|CK768857
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|151412937|gb|EV282749.1|EV282749
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|58024099|gb|CX710840.1|CX710840
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|22928497|gb|BU545636.1|BU545636
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCANNNGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|13563309|gb|BG551529.1|BG551529
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|14125643|gb|BG790081.1|BG790081
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCACTGGAGGCATCGC
EST: gi|298171918|gb|HO021510.1|HO021510
EST:     GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAG                         AGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCA
genomic: GAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgat ... ttacaagtagAGGGAGCATTGGAGGATAGAAATGCTCGAAGTGCAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTTTGTATTGGGAGCAGTGGTATATTAATCTGAATGTGGCCCAGCATCCGAAGGCACATTCTAGCAAGTATCATCATTCCAAAGTTGTTGATCCTGGAGgtgcattgattgctctgttcgtcaaactaaatctcttttcatgtttcactcctactgtgaatttacctgttttcctgtgtttcttacaagtag

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