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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaattctttgttatttaagttcttgtcctgttctttgccttaggaagaagaggaaattcattctggtctagtttcatatgttatagtctatatggttaattttacag

Basic information

species Glycine max
transcript GLYMA17G18540.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g02650.1 (Oryza sativa), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaatt--ctttgttatttaagttcttgtcctgttctttgccttaggaa-----gaagaggaaattcattctggtctagtttcatatgttatagtctatatggttaattttacag------
| || |||||||| || |||||||||||||| ||||| || || ||| | || ||||| ||||| |||||||| || || ||||||||  | |||||||     || |    | || |   ||||   || | | || | ||| ||| |        |  |     ||   |   ||| || |   ||| | | | ||  |||  ||| |||   |       
CCTGTATTAGTCCAGCAGATATCAATGCTGAAGAAACACTGAACACTTTGAAATATGCTAACCGCGCTCGTAACATCCAGAATAAGCCAATTgtaagttcattaaaatggtctcgtcagaaaagtatctgacat-ttatctgcgttatgtttctttaattaattggtttggttccgtcaaggtgattatttgaca-tccctatatttactttcctattttcag

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaat---tctttgtta---tttaagttctt----gtcctgttctttgcc---------ttaggaagaagaggaaattcattctggtctagtttcatatgttatag--tctatatggttaattttacag------------------------------------
||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || ||||| ||||||  | |  |    |||| | |    ||| | || ||     | | |  ||   |          | ||  |  | |  || | |||   |    |   |    |   | ||     | || ||| | ||   ||                                    
CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagtaccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaatt------ctttgttatttaagttcttgtcctgttct-------ttgccttaggaagaagaggaaattcattctggtctagtttcatatgttatagtctata-tggttaattttacag----------
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||| || ||||||||||| |||||| ||    |||        || ||   | | |||||||||| || |       ||  | |      ||  ||| |  | |  |  |  |  | |||| ||| | ||   || ||   ||                  
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagtatctcagattaccttatctttttcccttatttcttgtcctattttcccctccttctcctcaatgtaattggagaaacttggtattgaaactccatacgttctggtgcctaatgaagaagccctttatcttattcag

upper sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ26093 (Selaginella moellendorffii), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaattctttgttatttaagttcttgtcctgttctttgccttaggaagaagaggaaattcattctggtctagtttcatatgttatagtctatatggttaattttacag
| ||| | || ||||| |||   || || || ||||||||||| ||||| |||||||| || || ||||| ||||||||||| |||||    |||||| |    |   | ||   |   | ||    |   | ||  ||||                                                                     
CATGCGTCAGCCCTGCAGATTCTAACGCAGAAGAAACTCTCAACACTCTGAAGTATGCTAATCGGGCTCGAAATATTCAAAACAAGCCGACTgtaagtgtttttagcacattaaaaac-atgtaaaaggaatctttattgcag-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399371|gb|EV269242.1|EV269242
EST:     ATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA                         GTTAATCGAGATTTAATCTCCAATGAGATGCAGCAATTGCGCCAGCAGTTG
genomic: ATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttcc ... aattttacagGTTAATCGAGATTTAATCTCCAATGAGATGCAGCAATTGCGCCAGCAGTTG