Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTAGTCCAAGCAACTCTGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAGgtttgttgccgccatccgtaattgaatttaaatgggtggatagttatactgattcattatctatgttgtttttatggtgtggatttgaag

Basic information

species Glycine max
transcript GLYMA17G18400.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296136|gb|FG989496.1|FG989496
EST:     TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAG                         GGGTGGGATAGTTGTAAACTTCAAAAACAAACCCAAG-TGATGAAGTCTAC
genomic: TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAGgtttgttgcc ... ggatttgaagGGGTGG-ATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTAC
EST: gi|213620297|gb|DB961442.1|DB961442
EST:     TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAG                         GGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
genomic: TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAGgtttgttgcc ... ggatttgaagGGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
EST: gi|209698652|gb|BW652465.1|BW652465
EST:     TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAG                         GGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
genomic: TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAGgtttgttgcc ... ggatttgaagGGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
EST: gi|209707662|gb|BW676641.1|BW676641
EST:     TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAG                         GGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
genomic: TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAGgtttgttgcc ... ggatttgaagGGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
EST: gi|213616607|gb|DB971188.1|DB971188
EST:     TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAG                         GGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT
genomic: TGCAGCATCCATTATATCCATTGGATTATTCATTTCCATCAATTGATGAGgtttgttgcc ... ggatttgaagGGGTGGATAGTTGTAAACTTCAAAAACAAACCCAAGGTGATGAAGTCTACT