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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCATAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgtaagattatgaatctatcattatgaactctcattgttttgtatattatgtcaccatattttcagtgtttgttgtgaaatatattctgcatgatccattt...

Basic information

species Glycine max
transcript GLYMA17G16420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054634_T01 (Zea mays), 5'ss of exon 4
CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCATAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgtaagattatgaatctatcattatgaactctcattgttttgtatattatgtcaccatattttcagtgtttgttgtgaaatata-ttctgcatgatccattt---
 || ||||||||     |||| || || || || ||||| |     || |||   ||||| ||||||||| ||||||| |||||| | |||||||||||||||  |  |    | |      |    |||  | | |||  || ||| | |  |       |      ||||    | || |  |||||    |    |||   
GAGGGTTGCATATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCATGATTTGAATGCTTATAGGGTACTTTTTGATGAGgtac-acaacaggtttgctgacac---ctcctagtttttactacattttttttctgctggcttttccattgtaactacattttcttctgtgaaaatattttttt

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 4
CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCATAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgta------agatta--tga-atctatcattatgaactc--tcattgttttgtatattatgtcaccatattttcagtgtttgttgtgaaatatattctgcatgatccattt--
           |     |||| || || || || ||||| |     || |||   ||||| ||||||||| ||||||| |||||| | |||||||||||||||      || ||   ||| | ||   | | |  |||   |  || || ||     | |  ||   ||  | || | | |  ||||||| ||||| |   | |||  |    
-----------ATTTCATTGCGCAAGCTCTCGACCATTGCAATGCTGAGAACAGGAAAATCTATCATGATTTGAATGCTTATAGGGTACTTTTTGATGAGGTACACAACAGgtttgctgacacctcctagtttttactacattttttttctgctggcttttccattgtaactacattttcttctgtgaaa-atatttttttt-atctgtaagg

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 4
CAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCTTGGAAAACCATAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgtaagattatgaat---ctatcattatgaactctcattgtt---ttg-tatatt---atgtcaccatattttcagtgtttgttgtgaaatatattctgcatgatccattt
 |||||||||||  || |||| |||||||| ||||||||||     |||||||  || || ||||||||| |||||||||||||  ||||||||||||||||||| | ||||||   || || | |||   ||| ||||||   ||| ||| |      |     | || |||||  | | || |   | |||   |  || |       
GAGAGTTGCATATTATATTGCTCAGGCACTTGATCATTGTAATACAGAAAACCGGAAGATCTATCATGATTTGAATGCATATAGAGTTCTTTTTGATGAGgtaag-tcatgaattatctctcttcatgt-ttcttattgttgatttgctatgtctaggggctgatacatcttcagattcttttatttga-atacattagatca-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401818|gb|BE057452.1|BE057452
EST:     ACCGTAAAATATATCATGATCTGAATGCATATAGGATTCTNTNTGATGAG                         GATGGTGATCCACGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGAT
genomic: ACCATAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGgtaagattat ... tttctgtcagGATGGTGATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGAT