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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatgaatgtttgtagtttatttcttgaaaacattttctaatactacttttatgatgtcctctag

Basic information

species Glycine max
transcript GLYMA17G16400.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
lower sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatga-atgtttgtagtttatttcttgaaaacattttcta-atactacttt---tatgatgtcctctag-----------------
||| ||  ||||||| ||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || || |||||  |||| || ||         | |  | |||  |  |     |||| |   |||| | |  || || ||||   ||| ||  ||| ||                  
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctctaaagccacgttcttgatacccctctttatg-cattgtgtgtatgctcctttgtgtataata-cctttatctgcttaattgtttcag

upper sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
lower sequence: AT1G32380.1 (Arabidopsis thaliana), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatgaatgtttgtagt----------ttatttcttgaaaacattttctaatactactt--ttatgatgtcctctag-
||| ||| |||| || |||||  | ||||| |||||||| ||||||||||| || ||||||||||| ||||| || || |||||||||||  | || || |||  | |  | | ||  ||| |  |           || || ||    |   |||  |||  |||    || ||||  | | |   
TATAACAGAAGCCGGTGCAGATAGGGTTCTGGCTTGTGATCTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGATCATGTCTATTGCCAGgtatcttaagtttcaacctttttgatagacaagcctctactttttatgcaacctttaaaatcttacacaattgtgattacatttcag

upper sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatgaa----tgtttgtagtttatttctt---gaaaacatttt-ctaa-------tactacttttatgatgtcctctag
||| || ||||| || || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||  || | ||||| |||| |||  | | |     ||||||    |||| | ||   ||   ||| |  || |       ||||  || | |  ||  | | ||
TATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCACATATATTGTCAGgtaattaatttttaagccattgtttgatccttatctttttctgactccatatcactgaatgaaattactgtttgttttgtgcacacaag

upper sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
lower sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatgaatgtttgtagttt----atttcttgaaaacattttctaatactacttttatgat-gtcctctag----------------------------------------------------------------------------------------------------
 |||||  ||||||||||  |  | ||  | |||||||| ||||| ||||| |||||||||||||||||||| ||| |||| ||||||||  |  |||| || || |   ||  ||  ||| |  |||    |||| |  ||   |  || ||| | || | ||||  |  |  | | |                                                                                                    
AATTACTGAAGCTGGGGCCAATAGAGTATTGGCTTGTGATCTTCACTCAGGCCAGTCCATGGGTTACTTTGACATTTCTGTCGATCATGTGTATGGTCAGgtgagcattttaacaagttttattattttattatttttaaaatttaaattttaaaattattgttattcttatttttttgttattctccctcaagtgtaacatgttctatttgtgctcggaggaaaattcacatgttttattttaaaggttattgtctaattgggaaaccttgtatgcag

upper sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
lower sequence: PP1S152_123V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctat-----------gaatgtt-tgtagtttatttc-ttgaaaacattttctaatactacttttatgatgtcct---ctag----------
 |||||  ||||||||||| ||||||| ||  |||||||||| || || || ||||| ||||| |||||||||||||| || || |||||  |  | ||||||||| | ||||           ||| ||| || ||  || ||| ||| | |||| ||  |  | | | ||   | ||  ||   ||||          
AATTACTGAAGCTGGGGCAAACCGTGTGCTCACTTGTGACCTGCACTCTGGCCAGTCGATGGGCTACTTTGATATTCCCGTTGACCATGTTTATGGCCAAgtaagttatctatctgaattacctgaaagttatgaagcctaattcgttgtagacatgtttcacaattccattgcggctgctcttagctagcttcttgatg

upper sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
lower sequence: EFJ14005 (Selaginella moellendorffii), 5'ss of exon 3
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatgaatgtttgtagtttatttcttgaaaacattttctaatactacttttatgatgtcctctag
| | ||| |||| || ||  ||||||||||||| || ||| | || || |||||| |  ||||||||||||| ||||| |||||||||||  |  |||| |||| |  | | |   |  |   ||     ||       |  |||     |||                     
TTTGACAGAAGCCGGTGCGAACCGTGTTCTTGCATGCGACTTACACTCGGGGCAGGCGTTGGGTTACTTTGACATTCCCGTGGATCATGTTTATGGTCAGgtaactttggtttctctcctctaagcgagctt-------atgtttcgagctacag-------------------