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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggctaatcaatggtagagtgactaacttcatcagatagtttatactggccggtttcatgacatgactcttatgttctgtattatctaatggccta...

Basic information

species Glycine max
transcript GLYMA17G16200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16200.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 5'ss of exon 4
TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggctaatcaatggtagagtgactaacttcatcagatagtttatactggccggtttcatgacatgactcttatgttctgtattatc-taatggccta---
|||||||||| ||||| ||||| || || ||  | | ||| || ||||| ||||||||  |||| || ||||||||||||||||||||||| || || |||| |  |    ||||    | | |   |   ||| | ||    ||  |  |  |  | || ||   |||| | |  ||||    || ||| |  |  |||    
TCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCTTGTTGACAAGAGgtgagtggagttcaaa---aaaattcttgttttctttagccctttcctgttatcttgctt-atctgatgattttgctgttaataatgatcctctttaccttctg

upper sequence: GLYMA17G16200.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G169694_T01 (Zea mays), 5'ss of exon 4
TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggctaatcaatggtagagtgactaacttcatcagatagtttatactggccggtttcatgacatgactcttatgttctgtattatctaatggccta
|| |||| ||||| |||||||| || || || |||| ||| || ||||| ||||||||  |||| |||||||||||||||||||| ||||| || || ||||    | || | |    ||       |   |   | ||    |   |  |   | || | |  |  || ||        |  || |  | |    | ||
TCTTAAATACATCTAAGTGGATAGAGGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgttggtggtatttacacttatctgatttctatatcttagggcatgcttggtttgcagtctgaaaatttgcctgggccaagcaatacttcccaggctcgta

upper sequence: GLYMA17G16200.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G075719_T01 (Zea mays), 5'ss of exon 4
TCCTAAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAAAGAGGCAGCGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgt----aatggctaatcaatggtagagtgactaacttcatcagatagtttatac-tggccggtttcatgacatgactcttatgttctgtattatctaatggccta
|| |||| ||||| |||||||| || || || |||| ||| || ||||| ||||||||  |||| |||||||||||||||||||| ||||| || || ||||      ||  |  ||  |  |    |   ||  ||  |  | |  | |||   |     ||||      |      ||    ||| |  | || | |      
TCTTAAATACATCCAAGTGGATAGATGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgttggtggtgtttgctctttcctgatttctgtagttttgttggttgctctatgtatattttgtttggctttaaattctttggtctctctcatgtcaagta-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31307061|gb|CD392264.1|CD392264
EST:     GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... gacactacagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|192323740|gb|FK016046.1|FK016046
EST:     GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... gacactacagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|298166624|gb|HO010063.1|HO010063
EST:     GATGTTATTGTGGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... gacactacagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|120529270|gb|EH257404.1|EH257404
EST:     GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
genomic: GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... gacactacagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTAT
EST: gi|298177779|gb|HO027332.1|HO027332
EST:     GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAG                         GCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAG
genomic: GATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGATAAAAGgtaatggcta ... gacactacagGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAG