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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactgatttcacaacacagtacatttctgtccatttattttatctaaaaaatagcattcaatagtttcatatatcctttcttattggtccactgtttgacag

Basic information

species Glycine max
transcript GLYMA17G15740.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0204g00150.t01 (Vitis vinifera), 5'ss of exon 3
TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactg-atttcacaacacagtacatt-tctgtccatttattttatctaaaaaatagcattcaatagtttcatatatcctttcttattggtccactgtttgacag
|||||| |||||| | ||| | |||||||| || ||||| || |||||||||||  |||| || |||||||||||||| || |||||||| ||| | || ||  |  ||| |  ||   | ||  |  | |||||  |     || | |||| ||  |  | |  |  ||  | || | |   || |   | |  | ||      
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAAgttttccattcctgaatctaatatgtagtatgtcctctccagctaacaaaaatatgactcttag-acctttctttaacttgaattttactttccttattct----

upper sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 1
TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactg-atttcacaacacagtacatt-tctgtccatttattttatctaaaaaatagcattcaatagtttcat------atatcctttcttattggtccactgtttg-acag
|||||| |||||| | ||| | |||||||| || ||||| || |||||||||||  |||| || |||||||||||||| || |||||||| ||| | |||||  |  ||| |  ||   | ||  |  | ||||| ||      |   ||| | |  |  |      |||| |        ||  |   ||  |    | |  |||| ||||
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAGgttttccattcctgaatctaatatgtagtgtgtcctttccaggaaaaaaaatattgactctttgacctttctttaacttgaattttactttccttactctcgatttggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478706|gb|BG508074.1|BG508074
EST:     TTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAAAGCTCAG                         ACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCA
genomic: TTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactgattt ... tgtttgacagACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCA