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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGAGGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctag

Basic information

species Glycine max
transcript GLYMA17G15010.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193525054|gb|FK480167.1|FK480167
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGG
EST: gi|151393590|gb|EV263465.1|EV263465
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|15204339|gb|BI427107.1|BI427107
EST:     GTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|151400266|gb|EV270080.1|EV270080
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TCCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192308379|gb|FK000903.1|FK000903
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192320145|gb|FK012633.1|FK012633
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|6914978|gb|AW396508.1|AW396508
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298168811|gb|HO009741.1|HO009741
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|10236074|gb|BE805022.1|BE805022
EST:     CCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: CCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|18721259|gb|BM523334.1|BM523334
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGAGGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG