1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAAGAGGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctag
species | Glycine max |
transcript | GLYMA17G15010.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGEST: gi|151393590|gb|EV263465.1|EV263465
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|15204339|gb|BI427107.1|BI427107
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|151400266|gb|EV270080.1|EV270080
genomic: GTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TCCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|192308379|gb|FK000903.1|FK000903
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|192320145|gb|FK012633.1|FK012633
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|6914978|gb|AW396508.1|AW396508
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|298168811|gb|HO009741.1|HO009741
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|10236074|gb|BE805022.1|BE805022
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: CCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGEST: gi|18721259|gb|BM523334.1|BM523334
genomic: CCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGAGGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG