Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTGATGATATTGAGAAGCAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATCTCATATTATGACACTAAAGAGTATTTTACAGAACATGGTTTTAGgtgtgggtcaacaggaggtttggatccaatgaacatgtctggggaagttaacacacaatgcatagatttggagaacag

Basic information

species Glycine max
transcript GLYMA17G14820.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 2
CATCTGATGATATTGAGAAGCAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATCTCATATTATGACACTAAAGAGTATTTTACAGAACATGGTTTTAGgtgtgggtcaacaggaggtttggatccaatgaacatgtctggggaagttaacacacaatgcatagatttggagaacag
      ||||||||||||| || ||| | ||||||||||||||||| || |||| ||| |  | |||||||| |||| ||||| | ||||      | || |||||||| | |  |||                                                            
------ATGATATTGAGAAACAAGAGCTTGAGGAAGTGTCAGATGAGGAGGAAACCTCTTTCTTTGACACTAGAGAGGATTTTGCTGAACCCACAGTCAGTTGTGGgtctataacaggag----------------------------------------------------------

upper sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 5'ss of exon 4
-----CATCTGATGATATTGAGAAGCAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATCTCATATTATGACACTAAAGAGTATTTTACAGAACATGGTTTTAGgtgtgggtc---aacaggaggtttggatccaatgaacatgtctggggaagttaacacacaatgcatagatttggagaacag
     ||||||||||||||||||| || ||| | ||||||||||||||||| || |||| ||| |  | |||||||| |||| ||||| | ||||      | || ||||||||   |||||||| | |  ||   ||| | | |     | ||  | | |  |||       ||   |||||   
TGAATCATCTGATGATATTGAGAAACAAGAGCTTGAGGAAGTGTCAGATGAGGAGGAAACCTCTTTCTTTGACACTAGAGAGGATTTTGCTGAACCCACAgtcagttgtgggtctataacaggagttgtaaattacatggataagcaaatgaaacctgaaattcaacttgataatgcagagaag--