Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtaccaagttcccacccatcaccctgctatgactctcttgctattattttatcaatgcatttttagtgactctaagtgtgtttaaggtaaaagttc...

Basic information

species Glycine max
transcript GLYMA17G14370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14370.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g00670.t01 (Vitis vinifera), 5'ss of exon 4
ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagta-ccaagt-tcccacccatcaccctg--ctatgactctct-tgctattattttatcaatgcatttttagtgactctaagtgtgtttaaggtaaaagttc
| ||||| |||||||| || |||||  | |||||||| || ||||| || ||||||||||| ||||||| ||| |||||||| ||||| || |||||||||||||||  || |  |          |   ||  |||| |     | |   ||  ||     | |   || |      ||| | |||| | | |   |       
ATAAGGATTCCAAGTTTAGATTGATCTTGGTTGAGAGTAGGATCCATCGCCTTGCTCGCTATTACAAGAGGACAAAGAAGCTGCCACCTGTGTGGAAGTAgtaagtagtcacgccttttgttttctattttgtcctataaaaaggtgttaaatggttgcggtagtttgttgtgccaagctccacgtgtttgtcactcact-----

upper sequence: GLYMA17G14370.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0022g01590.t01 (Vitis vinifera), 5'ss of exon 4
ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtaccaagttcccacccatcaccctgctatgactctcttgctattattttatcaatgcatttttagtgactcta--agtgtgtttaag-gtaaaagttc
|||| ||||| |||||| | ||||||||||| |||||||| || ||||||||||  |||||||||||||  || |||||||| || ||||||||||| |||||||    |   ||  |     ||   || |   | |   ||||  ||| | | | |     | |||  ||  | |     | |  ||  | | | |||   
ACAAAGACTCAAAGTTCCGATTGATTCTTGTGGAGAGCAGGATTCACCGACTTGGCCGCTACTACAAGAGAACAAAGAAGCTTCCTCCAGTCTGGAAATAgtaagcttgatcatcatatttcccatattg-tgctaattggttgcatttaatgttttagcttttctttgatgggtttgccgttctacttctgtggacaagc--

upper sequence: GLYMA17G14370.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S39_130V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtaccaagttcccacccatcaccctgctatgactctcttgctattattttatcaatgcatt--tttagtgactctaagtgtgtttaaggtaaaagttc
|||||||||| |||||| | |||||| |  | |||||| |  ||||| | || |||||||||||||||   |||||||||||||| ||   ||||||||||||||||  ||    |||| | |  |  |   | || | |  |      ||   || |||   |    ||| |  | ||  |    || |   ||  ||   
ACAAGGACTCTAAGTTCCGATTGATTTTGATCGAGAGCCGTGTCCACAGGCTAGCTCGCTACTACAAGCGCACCAAGAAGCTCCCCCCTACCTGGAAGTAgtaagtagtaacactccactcctt-ctatctgaggaatattgttgaggaatgacatgaataggtgggcttaatttcactctgcagtttcacattattagca-

upper sequence: GLYMA17G14370.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ28020 (Selaginella moellendorffii), 5'ss of exon 4
ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtaccaagttcccacccatc---accctgctatgactctcttgctattattttatcaatgcatttttagtgactctaagtgtgtttaaggtaaaagttc
||||||||||||||||| |  | || ||  | ||||||||| ||||||| || ||  | |||||||||| ||||||||||||||| |||  ||||||||||| |||      ||| | | | |     | ||      |    ||| |  | || |||    |  || ||    |                            
ACAAGGACTCCAAGTTCCGCCTCATCCTCATCGAGAGCAGAGTCCACCGCCTCGCAAGATACTACAAGAGGACCAAGAAGCTCCCTCCAACCTGGAAGTAgtgagtgttcttttctctctcgttctagctctatctccagaaacttaccttgatcttacgtgttgatcttggcag----------------------------

upper sequence: GLYMA17G14370.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ29450 (Selaginella moellendorffii), 5'ss of exon 4
ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtaccaagttcccacccatcaccctgctatgactctcttgctattattttatcaatgcatttttagtgactctaagtgtgtttaaggtaaaagttc
||||||||||||||||| |  | || ||  | ||||||||| ||||||| || ||  | |||||||||| ||||||||||||||| |||  ||||||||||| |||     ||||           |  | | |   |||    | |  |  |||        ||    ||   |||  |                    
ACAAGGACTCCAAGTTCCGCCTCATCCTCATCGAGAGCAGAGTCCACCGCCTCGCAAGATACTACAAGAGGACCAAGAAGCTCCCTCCAACCTGGAAGTAgtgagt-----gttcttcttttctctctcgttctagttctagctccagaaacttacgttgatcttacgtgttgatcttggcag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715002|gb|BW650853.1|BW650853
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|24205169|gb|BU964422.1|BU964422
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|8826365|gb|BE210095.1|BE210095
EST:     TTGCTCGCTACTACAAGAAGACCAAGAAGCCTCC-ACCAGTCTGGAAGTA                         TGAAATCAACA-CTGCGAGCACTCTGGTTGCT
genomic: TTGCTCGCTACTACAAGAAGACCAAGAAGC-TCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAA-TCAACAACTGCGAGCACTCTGGTTGCT
EST: gi|31465125|gb|CD407153.1|CD407153
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|21602479|gb|BQ612810.1|BQ612810
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|6134515|gb|AW132908.1|AW132908
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|6724735|gb|AW309134.1|AW309134
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTTGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCT
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCT
EST: gi|192333609|gb|FK025426.1|FK025426
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|120531773|gb|EH259906.1|EH259906
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|207716270|gb|GD697562.1|GD697562
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|6667146|gb|AW278605.1|AW278605
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTAGTTGCT
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCT
EST: gi|17964275|gb|BM271013.1|BM271013
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|24135598|gb|BU926108.1|BU926108
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|209715001|gb|BW650852.1|BW650852
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|207706868|gb|GD688984.1|GD688984
EST:     CTTGCNCGCTACTACAAGAAGACCGAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCG
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCG
EST: gi|192299513|gb|FG988768.1|FG988768
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|15814128|gb|BI786403.1|BI786403
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|31457578|gb|CD399606.1|CD399606
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|5175302|gb|AI759635.1|AI759635
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|298181044|gb|HO022483.1|HO022483
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|8402158|gb|BE057792.1|BE057792
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|209703734|gb|BW670697.1|BW670697
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|213601096|gb|DB964631.1|DB964631
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|6665914|gb|AW277373.1|AW277373
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCNAGCACTCTGGTTGCT
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCT
EST: gi|208286407|gb|GE084309.1|GE084309
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|17400116|gb|BM176898.1|BM176898
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|15286634|gb|BI470525.1|BI470525
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCT
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCT
EST: gi|23726192|gb|BU761080.1|BU761080
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|192296958|gb|FG991954.1|FG991954
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|209712440|gb|BW671292.1|BW671292
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|254323822|gb|GR840355.1|GR840355
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|193660071|gb|FK606047.1|FK606047
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTTGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|14125951|gb|BG790389.1|BG790389
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCT
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCT
EST: gi|209703733|gb|BW670696.1|BW670696
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|24135570|gb|BU926080.1|BU926080
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTA
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTA
EST: gi|20811889|gb|BQ296367.1|BQ296367
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTA
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTA
EST: gi|254323823|gb|GR840356.1|GR840356
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|193309846|gb|FK274554.1|FK274554
EST:     AGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: AGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|298190444|gb|HO032565.1|HO032565
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|209712441|gb|BW671293.1|BW671293
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|57575626|gb|CX548601.1|CX548601
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
EST: gi|192330411|gb|FK021184.1|FK021184
EST:     CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTA                         TGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC
genomic: CTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtacca ... acttttgcagTGAATCAACAACTGCGAGCACTCTGGTTGCTTAGAGAATGTATCAACTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGGACTCCAAGTTCAGGTTGATTCTTGTTGAGAGCAGAATCCACCGACTTGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTAgtaagtaccaagttcccacccatcaccctgctatgactctcttgctattattttatcaatgcatttttagtgactctaagtgtgtttaaggtaaaagttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccc