1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTTTTCGAACCCTGGGTACACCCGACGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACCgtaagcatgtcttctctctttttcttcttgataagaattctatgctatgggttataaagcagttacattttgcaactgtttgactataagttattgatatttcag
species | Glycine max |
transcript | GLYMA17G13750.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACC GATTAATACACTAAGAAAGAAGTTTCCAGCCGCGTCATTTACTGGTTTGCCEST: gi|8401569|gb|BE057133.1|BE057133
genomic: CCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACCgtaagcatgt ... gatatttcagGATTAATACACTAAGAAAGAAGTTTCCAGCCGCGTCATTTACTGGTTTGCC
EST: CCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACC GATTAATACACTAAAAAAGAAGTTTCCAGCCGCGTCATTTACTGATTTGCCEST: gi|16996736|gb|BM086108.1|BM086108
genomic: CCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACCgtaagcatgt ... gatatttcagGATTAATACACTAAGAAAGAAGTTTCCAGCCGCGTCATTTACTGGTTTGCC
EST: CCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACC GATTAATACACTAAGAAAGAAGTTTCCAGCCGCGTCATTTACTGGTTTGCC
genomic: CCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACCgtaagcatgt ... gatatttcagGATTAATACACTAAGAAAGAAGTTTCCAGCCGCGTCATTTACTGGTTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTTCGAACCCTGGGTACACCCGACGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCAAATTTTGTTAAGCAACCgtaagcatgtcttctctctttttcttcttgataagaattctatgctatgggttataaagcagttacattttgcaactgtttgactataagttattgatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA