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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaatttgtgatggaatcatttccccaatttacaaataatttgggggttaagacaacagtgaatttaaatggttttaacag

Basic information

species Glycine max
transcript GLYMA17G13440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaatttg-tgatggaatcatttccccaatttacaaa--taatttg--ggggttaagacaacagtgaatttaaatggtt--ttaacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  | ||| | | |||| |    |   | ||   | | |  |||      |  | | | |||   |||||||| ||||| |  |   |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacattggtgaatttgaatggatggtgggcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaatttg-tgatggaatcatttccccaatttacaaata-----atttgggggttaagacaacagtgaatttaaatggtt--ttaacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |  || | | |||  |    | | |  |   | |||||     || ||| | |||| ||    ||||||||  ||   |  | | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatatggtgcttaa-acgttggtgaatttggattaatggtgagcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacagtgaatttaaatggtt--ttaacag
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||     |||  |||||      |   | |  |||||      ||  || ||| | |||| |||   ||||||||  ||   |  | | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacagtgaatttaaatggtt--ttaacag----
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||     |||  |||||      |   | |  |||||      ||  || ||| | |||| |||   ||||||||  ||   |  | | |||    
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcaggtct

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtatttaat-----ttgtgatgga-atcattt-ccccaatttacaaataatttgggggttaagacaacag-tgaatttaaa-tggttttaacag
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |     ||||||||   || |||| ||||  |||   ||  | |||||| | ||       | |||| ||||| |||||   ||||
TTGTGTACAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 5
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtat----ttaatttgtgatggaatcatttccccaattt-acaaataatttgggggttaagacaaca---gtgaatttaaatggttttaacag
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    || | || ||||||  | ||||||||||||| || |||| |||||||||||||||        |||||| ||||||||| |||||
TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207776596|gb|GD747468.1|GD747468
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|192295348|gb|FG986002.1|FG986002
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGCTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGG
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGG
EST: gi|9986568|gb|BE660676.1|BE660676
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|9901661|gb|BE610629.1|BE610629
EST:     TTGTGTGCAAATACGGGACTCGTTTGACTATCGTCATCATATCTGTATT                         GTGTTTGAGAA
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAA