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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagttttaggtggaaaagattaatcttcatgtccataaattacctatgtagctactaatgccatttttctactctgggaag

Basic information

species Glycine max
transcript GLYMA17G10640.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 4
GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagttttaggtggaaaagattaatcttcatgtcca-taaattacctatgt------agctactaatgccatttttctactctgggaag----------
| ||||| ||| |||  ||||| |||||||| |||||||| ||||||||||| || || |||||||| ||||| |||||||| || |||||||||  |           | |||||  |    |     |   | ||| | |      || ||  | |     | |   | |  || |            
GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACAgtaagcctctctccctgctgtttaatacttgcctgtggcatggttcctgtttcttacaagttataagtatttatgtggcatttcggaacaatagtctaac

upper sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110983_T04 (Zea mays), 5'ss of exon 4
GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagttttaggtggaaaagattaatcttcatgtccat-aaattacctatgtagctactaatgccatttt--tctactctgggaag--------------
| ||||||||| ||| ||| || |||| ||| || ||||||||||| ||||||||||| |||||||| ||| | ||||| || || ||||||||||| |   |     | ||| |      ||   |  |||| |  |     | |  |     |  | |  | |||| |   |                
GTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACAgtaagttgtttctcatccatatttacaagattgcataagaaataagttgatctgattttgtcttcgctgtgatgtactttttaagattccaaagcatgtt

upper sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110983_T03 (Zea mays), 5'ss of exon 2
----------GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagttttaggtggaaaagattaatcttcatgtccat-aaattacctatgtagctactaatgccatttt--tctactctgggaag--------------
          | ||||||||| ||| ||| || |||| ||| || ||||||||||| ||||||||||| |||||||| ||| | ||||| || || ||||||||||| |   |     | ||| |      ||   |  |||| |  |     | |  |     |  | |  | |||| |   |                
TTATTCTCAGGTACGTTTAAGCTGACTCTCCAGTTTAATGAAGAATATCCAAACAAACCACCAACTGTGCGATTTGTTTCTAGGATGTTCCATCCTAACAgtaagttgtttctcatccatatttacaagattgcataagaaataagttgatctgattttgtcttcgctgtgatgtactttttaagattccaaagcatgtt

upper sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 4
GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtt----ttaggtggaaaagattaat-cttcatgtccataaattaccta--tgtagctactaatgccatttttctactctgggaag-----
| |||||||| ||||  ||||| ||| | ||||| ||||||||||| |||||||| || |||||||| || || ||||| || ||||| ||||||||     || || | ||  | ||   ||||||||  |  | ||   ||  ||  | | || |   |    || || | ||    |     
GTACGTTTAAATTGACACTTCAGTTTTCGGAGGAGTATCCAAACAAACCACCAACAGTGCGATTTGTTTCCCGTATGTTCCATCCAAATAgtaagttggaactatgttgcaattagtatcacttcatgttaaatatttctttagctgcggtttcttacttctaccttttattttgaattggccag

upper sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 3
GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagttttaggtggaaaagattaatcttcatgtccataaattacctatgtagctactaatgccatttttctactctgggaag-------------------
| ||||| |||||||   | |||||||| ||||||||||| |||||||| || || || || ||||||||    ||||||||||| |||||||||  ||    | |     ||   |   | |     |   |    || | | ||    ||   |  | | |   |||   |                   
GGACGTTCAAGTTGACGTTGCAATTTACCGAGGATTATCCGAACAAGCCTCCTACAGTGCGTTTTGTCTCGAAGATGTTTCACCCTAACAgtaagcgttttccgcatgcacttgtacacgaggggtcaaggatgttgat-tggttagggttggggtggt-cgaaggtggagggtggattgggattttagctg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6846800|gb|AW349090.1|AW349090
EST:     AAACAAGCCACCAACTGTACGATTTGTNNNNCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|254335070|gb|GR844855.1|GR844855
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|16106211|gb|BI893951.1|BI893951
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|254335069|gb|GR844854.1|GR844854
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|15001308|gb|BI322122.1|BI322122
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|10235145|gb|BE804033.1|BE804033
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|192331367|gb|FK021035.1|FK021035
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|21888252|gb|BQ741465.1|BQ741465
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|192330437|gb|FK021196.1|FK021196
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|254331190|gb|GR843309.1|GR843309
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|192330438|gb|FK021197.1|FK021197
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|16996966|gb|BM086338.1|BM086338
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|208058951|gb|GD858983.1|GD858983
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAA-CCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|254317222|gb|GR826167.1|GR826167
EST:     AAACAAGCCACCAACTGTACGA-TTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|192331366|gb|FK021034.1|FK021034
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|8284603|gb|BE022162.1|BE022162
EST:     AGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTCATGCGCATGCAAGTATCTGTTTGCATATATCACAAAACCAGTGGAGTC
genomic: AGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|14259666|gb|BG882574.1|BG882574
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
EST: gi|254317221|gb|GR826166.1|GR826166
EST:     AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACA                         TTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC
genomic: AAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACAgtaagtttta ... ctctgggaagTTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTC