Sequence
atgc intronic sequence ATGC exonic sequenceCAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatggtttacttgccttttgtactttgataataatttttggaataaccagaacatgatgactaacttttgatgcttgacag
Basic information
species | Glycine max |
transcript | GLYMA17G09270.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G362850_T01 (Zea mays), 5'ss of exon 5
CAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatg-----gtttacttgcctt--ttgtactttgat-aataatttttggaataaccagaacatgatgacta-acttttgatgcttgacag
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CAGGAAGAATCTACAAAATTTGGATCATATTCAAGAACTAGAAGCACATGTGTCTATGGTGGTGCACCTAAGGGTCCACAAATACGGGACCTTAGAAGAGgtacctgcacacatctgtccactttaattctttttagatgaatgccttttaaactcaatgcaatctgtcatttgcacttttag----------
upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G059020_T01 (Zea mays), 5'ss of exon 6
CAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatg-----gtttacttgcctt--ttgtactttgat-aataatttttggaataaccagaacatgatgacta-acttttgatgcttgacag
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-----------------------------------------AAGCACATGTGTCTATGGTGGTGCACCTAAGGGTCCACAAATACGGGACCTTAGAAGAGgtacctgcacacatctgtccactttaattctttttagatgaatgccttttaaactcaatgcattctgtcatttgcacttttag----------
upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 4
lower sequence: AC209019.3_FGT003 (Zea mays), 5'ss of exon 2
CAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatg-----gtttacttgcctt--ttgtactttgat-aataatttttggaataaccagaacatgatgacta-acttttgatgcttgacag
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CAGGAAGAATCTACAAAATTTGGATCATATTCAAGAACTAGAAGCACATGTGTCTATGGTGGTGCACCTAAGGGTCCACAAATACGGGGCCTTAGAAGAGgtacctgcacacatctgtccactttaattctttttagatgaatgccttttaaactcaatgcattctgtcatttgcacttttag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814206|gb|BI786481.1|BI786481EST: CATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAG GCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAG
genomic: CATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatggtt ... tgcttgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatggtttacttgccttttgtactttgataataatttttggaataaccagaacatgatgactaacttttgatgcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT