Sequence
atgc intronic sequence ATGC exonic sequenceGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgccaaataagtataatccttcgattaatgttagtcacgtaatgtgttgtgtgtgagttcaatgtgttttacttttgatgttgtag
Basic information
species | Glycine max |
transcript | GLYMA17G07040.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G18876.2 (Arabidopsis thaliana), 5'ss of exon 2
GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgccaaataagtataatccttcgattaatgttagt-cacgtaatgtg---ttgtgtgtgagttcaatgtgttttact---tttgatgttgtag--
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GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgttttttttatctgaatgttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg
upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgta--gttgccaaataagtataatccttcgatt-aatgttagtcacgtaatgtgttgtgtgtgagttcaatgtgttttacttttgatgttgtag----------
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GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttggg----gttagagattgggataactcaattttagcgaattaacttccactgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323206|gb|FK016337.1|FK016337EST: AGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACG ACTGTTGTCTGACATTTCGAGATTGGAGGCCAAAGTGGAGAGGCTTGAAGG
genomic: AGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgcca ... gatgttgtagACTGTTGTCTGACATTTCGAGATTGGAGGCCAAAGTGGAGAGGCTTGAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgccaaataagtataatccttcgattaatgttagtcacgtaatgtgttgtgtgtgagttcaatgtgttttacttttgatgttgtag
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