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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTTGAGATTGTGACTGGAAGCGCAAAAAAACAGACGAAGGAAAAATCATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatatcttagtaccttcactcttccctgtatgatatttttctctttatatatattttttaccgtcataattgctttattagaaaatatttggact...

Basic information

species Glycine max
transcript GLYMA17G05940.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207841911|gb|GD814999.1|GD814999
EST:     CAGTAACAAATCAAAATCTGGTTCAAAAGGG                         CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: CAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: gi|192312491|gb|FK003227.1|FK003227
EST:     CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG                         CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: gi|26048084|gb|CA784679.1|CA784679
EST:     CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG                         CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: gi|192312490|gb|FK003226.1|FK003226
EST:     CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG                         CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: gi|193357066|gb|FK319646.1|FK319646
EST:     TCCATTTTCAAACCAACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG                         CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: TCCA-TTTCAAACC-ACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: gi|6846794|gb|AW349084.1|AW349084
EST:     CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG                         CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA