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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTTGGCCAAAGATGGTCCTGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgtaaataatttcacatcaagaagtaaaaaacaatgacaggttgacttggagtttaatttttaactcattgctagctcaaatctcacacgtgtacatttttttcttcttccgtatag

Basic information

species Glycine max
transcript GLYMA17G05660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05660.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g25550.1 (Oryza sativa), 5'ss of exon 4
TTTGGCTTGGCCAAAGATGGTCCTGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgta----aataatttcacatcaag-------aagtaaaaaacaatg---acaggttgacttggagtttaattt--ttaactcattgctagctcaaatctcacacgtgtacatttttttcttcttccgtatag--------------------------------
|| ||  ||||||||||||| ||| ||| ||| || ||||| || || |||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||    |||  |  |||||  ||       |  ||   |    ||   ||  || |    | |||||||  |  |  ||   |      | | ||    | |    || ||   |||| | || |   ||                                 
TTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGgtactaaaattgtcacacatatagtctacctagctagctagttttgtaaacgagtagtggcgaagtttaacataatatacctttcatgtaccctaaagaaataaaaatatatacctttcatgtttcaactaattggctattaatattacttcatgttattgcag

upper sequence: GLYMA17G05660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 4
TTTGGCTTGGCCAAAGATGGTCCTGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgtaaataatt---------tcacatcaagaagtaaaaaacaatgacaggttgacttggagt-ttaattt-ttaactcattgctagctcaaatctcacacgtgtacatttttttcttcttccgtatag
|||||  | ||||| || || |||||||| ||||||||||| ||||||||  |||| ||||| |||||||| ||||| || ||||| ||||| ||||||||||| | | |         ||  ||| |||   ||   | || | ||  ||   |||||||  ||||   ||  ||  ||   ||                                          
TTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATGCTGCTCCAGAGTACATTATGACAGgtaattcagtaaggtttaatccaatctagattgaatgtaaaagggcatattactttggagtactaataagtttgcttgttttcag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064506|gb|BU579279.1|BU579279
EST:     TAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAG                         GACACTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTCGTGCTCTTGG
genomic: TAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGgtaaataatt ... ttccgtatagGACACTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTCGTGCTCTTGG