Sequence
atgc intronic sequence ATGC exonic sequenceTCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAgtaagttcctttcatcagaataaaacctatgctttttttagtgtttgctaaataataaatgcttgatgggggtaacttgaattatttggtaaagtagtga...
Basic information
species | Glycine max |
transcript | GLYMA17G05490.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G05490.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G133029_T01 (Zea mays), 5'ss of exon 4
TCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAgtaagttcctttcatcagaataaaacctatgctttttttagtgtttgctaaataataaatgcttgatgggggt--aacttgaattatttggtaaagtagtga----
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TCTCTCATTGCCTGAAAGGTTCGGATAATGGTGGTGGCATTCTTGTGCTTGGTGAAATTGTGGAGCCAGGATTAGTGTATACTCCACTTGTTCCATCACAgtaagtttctttccttggaat-----ttcttttgggtgtaaaacttcacaaatc-tgcatgctatcttatgtttcagcaccattctactgcgactgttgtgatatt
upper sequence: GLYMA17G05490.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G22850.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAgtaagt-tcctttcatcagaataaaacct----------atgctttttttagtgtttgctaaataataaatgcttgatgggggtaacttgaattatttggtaaagtagtga------------------------------------------------
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TCTCTCACTGCTTGAAAGGAGAGAATGGAGGCGGAGGCATATTGGTTCTTGGAGAGATTGTGGAGCCAAACATGGTCTTTACTCCACTTGTTCCCTCACAgtgagtgttcatttatccctcgaaaccgtttcattttaaatagttgttcaaatgttcattagagagtgactgataagcatgatcttatttaaatagttgctcaaatgttcattagagattgactgataagcatgatcttatggcgtgttaaaatgtcag
upper sequence: GLYMA17G05490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 4
TCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAgtaagttcctttcatc---agaataaaac--ctatgctttttttagtgtttgctaaataataaatgcttgatgggggtaact-tgaattatttggtaaagtagtga
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TTTCACATTGCTTGAAAGGAGATGGTGGTGGCGGTGGTATATTGGTTCTTGGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttttttctctttagaatgaaaatgcaactcttattttaggtttcatgtcctcagtaaaatttgacctttttgattgttaatagtacatttgga------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8282905|gb|BE020466.1|BE020466EST: GGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACA GCCTCATTACAATTTAAATCTACAGAGCATCGCTGTCAATGGCCAGACATT
genomic: GGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAgtaagttcct ... aatatttcagGCCTCATTACAATTTAAATCTACAGAGCATCGCTGTCAATGGCCAGACATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAgtaagttcctttcatcagaataaaacctatgctttttttagtgtttgctaaataataaatgcttgatgggggtaacttgaattatttggtaaagtagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggggg