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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTACAAATGGTTTACGGATCTTGAATCTGCCATGAAATCAGAGGTCAgtacttagtagtcttgttatgccgacattgtgtaacactctgtttattttgattgcggactcttaacttagtctccaattgtag

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73430.2 (Arabidopsis thaliana), 5'ss of exon 5
TTCTACAAATGGTTTACGGATCTTGAATCTGCCATGAAATCAGAGGTCAgtac-ttagt---agtcttgttatgcc-------gacattgtgtaacactctgtttattttgattgcggactcttaacttagtctccaattgtag
||||||||||||||||| ||||||||||| || ||||| || ||||| ||| | |||||   |||| |||| | ||        |  ||| | || | |   |  | | ||  |    |   ||  ||   | ||  | | |||
TTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAGgttagtccgttagtgaaagtcatgttgtaccttggttaaaagttgggaaagattacttgaaatgtgtcta-aaatgattttctctttttctgagt-tag

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 5
TTCTACAAATGGTTTACGGATCTTGAATCTGCCATGAAATCAGAGGTCAgtacttagtagtcttgttatgccgacattgtgtaacactctgtttattttgattgcggac-tcttaacttagtctccaattgtag---
||||| || |||||||| ||||||||||| |||||||| |||||||| |||| |   |  |||||||   |  | |||  || |   ||  ||| | |   ||| | |  |   | || | ||  |  ||  |    
TTCTATAAGTGGTTTACTGATCTTGAATCAGCCATGAAGTCAGAGgttagtagtggtt--tcttgttgcac-aatatttggttatggtccattt-tgtgagttgggcatatggcatctgattcctctctttcattag