Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgagttcattcatatctttttaggtcctgtaatatccaattatccattcatgttatgtaccatgagaaatgttatcaatttgtgttacagaagttaagtgtattttgtttag

Basic information

species Glycine max
transcript GLYMA17G04930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G324727_T01 (Zea mays), 5'ss of exon 8
CCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgagttca---ttcatatctttt-taggtcctgtaatatccaattatccattcatgttatgta-ccatgagaaatgttatcaatttgtgttacagaagttaagtgtattttgtttag-----------------------------------------
 ||||| ||  || | ||||| || ||||||||||| || ||| ||||||||||||| || || ||||||||| |  | ||||    ||  || || |||||| || ||   | | | ||      |  | ||||   || || | |     |   | |||| |  |  |   |  | | ||||  |  |   ||   |     | |   |||  | |                                         
ACAAATAGGAAATGCCATTGGCAAACTACATGATGGAGGCCTTGTTCATGGTGATTTGACCACGTCAAACATGATGATTAAGAACAGTAACAATCAATTGgtgggtacaatatccgtttcgccaacaccttctgtttaatgcattcactttattgagctatggagtcgagtttatggctgtcaagatcagcagcaatcgacccatctgagttgcatcgtggctattgatttgcaacttatatgtgttaaatcttggcag

upper sequence: GLYMA17G04930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 4
CCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgag------ttcattcat---atctttttaggtcctgtaatatccaa----ttatccattcatgttatgtaccatgagaaa-----tgttatcaatttgtgttacagaagttaagtgtattttgtttag
 || ||||||||| ||||||| ||| | |||||||||   ||||||||||||||||| || ||||||||||||||| || |||||| ||| || ||  |||||||      | |  | ||   ||| | | |||   ||   | | ||     || |   | |   |    | |||||| |||     | ||||| |  | |||||       ||  |    ||    |||
GCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggatttgtgcccttatttgatcatgtgaggatttgggttgttcacacctttttttgtcctcttcccatcccatgataaaatggtttttatccaactatgttat---gactattttaccttctcctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309248|gb|FG999461.1|FG999461
EST:     GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTG                         GTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
genomic: GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgagttcat ... ttttgtttagGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
EST: gi|151411775|gb|EV281586.1|EV281586
EST:     GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTG                         GTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
genomic: GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgagttcat ... ttttgtttagGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
EST: gi|192329503|gb|FK021873.1|FK021873
EST:     GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTG                         GTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
genomic: GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgagttcat ... ttttgtttagGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
EST: gi|192309249|gb|FG999462.1|FG999462
EST:     GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTG                         GTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG
genomic: GTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgagttcat ... ttttgtttagGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAG