Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctatattaatgttatgtggatgtttgcctagactcttggacataaaaatctcaagtttcttatttgtttag

Basic information

species Glycine max
transcript GLYMA17G04190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04190.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g20100.1 (Oryza sativa), 5'ss of exon 4
TGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgt-taacctatattaatgttatgtggatgt---ttgcctagactcttggacataaaaatctcaagtttcttatttgtttag------
 |||||||||||||| |||||||| || || || || ||||| ||||||||||||||  | || || || || || || ||||| || || |   | ||||| |    |  |||  |  |      | ||    |  ||| | | ||  | |   ||  |   ||| | || |||   |        
CGACATTGGTGGAATCAATGGCCTTCTCCATGTCAGCCAGATTAGTCATGACCGTGTTGCGGACATCTCGACAGTTCTGCAACCAGGAGATACGCTCAAGgtattttttgcattcgtacttgagaaaagtatactatctaaagt-ttatagagctaaggccagagtattttttttaaatgctattag

upper sequence: GLYMA17G04190.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G30510.1 (Arabidopsis thaliana), 5'ss of exon 4
TGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctatattaatgttatgtggatgtttgcctagactcttggacataaaaatctcaagtttcttatttgtttag
||||||||||||||| ||||| || ||||| || |||||||| ||||||||||||||  | |||||  ||||||| ||||| ||||||||||  || |||||  ||   ||              | ||||   |  |    |  | | || | || | |  || | ||  ||  ||
TGACATTGGTGGAATCAATGGGCTTCTTCATGTCAGTCAGATAAGTCATGACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctta-------------aacgtttaatttcagatgttaaaacaacagtccctaacttttaat--gtacag

upper sequence: GLYMA17G04190.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0077g00450.t01 (Vitis vinifera), 5'ss of exon 4
TGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctata--------ttaatgttatgtggatgtttgcctagactcttggacataaaaatctcaagtttcttatttgtttag---------------
 ||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||  | |||||| | || || |||||||||||||||||  | ||||||  ||||||        | |||  | |    |  |||         | |  | ||||| |  |  |  |  |||||| ||  |               
CGACATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCATGATCGTGTCTCAGATATTGCCACAGTTCTTCAACCTGGTGACATCCTCAAGgtttgcctataatatactgtcaatactgtcaccaaatttcttccactccctacagataaataaatgtatgtatttattttttgtgtttctcttgctgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796894|gb|AW782288.1|AW782288
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|120492190|gb|EH220357.1|EH220357
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|7234235|gb|AW569574.1|AW569574
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31307118|gb|CD392321.1|CD392321
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31307953|gb|CD393156.1|CD393156
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31312418|gb|CD397621.1|CD397621
EST:     GACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCCCT
genomic: GACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31460197|gb|CD402165.1|CD402165
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31461540|gb|CD403568.1|CD403568
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|120496890|gb|EH225057.1|EH225057
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|13481318|gb|BG510661.1|BG510661
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31463323|gb|CD405351.1|CD405351
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|15199690|gb|BI423960.1|BI423960
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31312300|gb|CD397503.1|CD397503
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31462339|gb|CD404367.1|CD404367
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|15202941|gb|BI425709.1|BI425709
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCTTGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31469708|gb|CD411736.1|CD411736
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31460037|gb|CD402065.1|CD402065
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|11414052|gb|BF425992.1|BF425992
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31308252|gb|CD393455.1|CD393455
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31470914|gb|CD412942.1|CD412942
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31306284|gb|CD391487.1|CD391487
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31458368|gb|CD400396.1|CD400396
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31307868|gb|CD393071.1|CD393071
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31457183|gb|CD399211.1|CD399211
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|23732531|gb|BU764426.1|BU764426
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|10252976|gb|BE820742.1|BE820742
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|209699736|gb|BW655775.1|BW655775
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31309693|gb|CD394896.1|CD394896
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|120491477|gb|EH219644.1|EH219644
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31465686|gb|CD407714.1|CD407714
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|120497033|gb|EH225200.1|EH225200
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|120491890|gb|EH220057.1|EH220057
EST:     ACCGTGTAACTGATATTTCACCTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31561839|gb|CD487677.1|CD487677
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|7029450|gb|AW459233.1|AW459233
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|120492250|gb|EH220417.1|EH220417
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
EST: gi|31308426|gb|CD393629.1|CD393629
EST:     ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAG                         GTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT
genomic: ACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGgttaacctat ... atttgtttagGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACT