1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTACAAAGGTTTCCATGACTATGCAAAGTTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcattagttcattagaaatgtgctgctaaggacatgcaaatttacctctaagttaatgttgatcattatatctggttctctattagagatgacaatttgtccgttgatggcaatagattaaaaggaaaagagcaatattttttttttgcag
species | Glycine max |
transcript | GLYMA17G03990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTAEST: gi|298199023|gb|HO042386.1|HO042386
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGEST: gi|209699970|gb|BW661199.1|BW661199
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAG
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTAEST: gi|213611707|gb|DB969095.1|DB969095
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATNCA-GCTCTGCAGCGTTTGTCTGCTCATCCCACA-TTGCEST: gi|207782813|gb|GD752396.1|GD752396
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTAT-CAAGCTCTGCAGCGTTTGTCTGCTCATCC-ACAATTGC
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTAEST: gi|192321624|gb|FK013968.1|FK013968
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGGCTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTAEST: gi|13481495|gb|BG510838.1|BG510838
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTAEST: gi|19453433|gb|BM954843.1|BM954843
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGCTCTGCAGCGTTTGEST: gi|213597925|gb|DB958306.1|DB958306
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTG
EST: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAG GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
genomic: TGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcat ... ttttttgcagGTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAAGGTTTCCATGACTATGCAAAGTTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcattagttcattagaaatgtgctgctaaggacatgcaaatttacctctaagttaatgttgatcattatatctggttctctattagagatgacaatttgtccgttgatggcaatagattaaaaggaaaagagcaatattttttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA