1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATGCAGGTATCAAAGTTTGTGTCTCTTGCTGAAACTGTGCCCAGTATTGCCCGGGAAGATCATGATGATCTCTACCAAGCAATTAACATCTATCTTAAGgtaaagtacccgtataacacctgcagtcacttgtttagttttcgtcgtcccttgctttaatgctggaaaattttacgtgaaaaaaaaatcaagtattagg...
species | Glycine max |
transcript | GLYMA17G00840.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGATCATGATGATCTCTACCAAGCAATTAACATCTATCTTAAG GTACATACTGACCTGAGCAAGGCAGEST: gi|208024206|gb|GD823794.1|GD823794
genomic: AAGATCATGATGATCTCTACCAAGCAATTAACATCTATCTTAAGgtaaagtacc ... gcatgaacagGTACATACTGACCTGAGCAAGGCAG
EST: CCGGGAAGATCATGATGATCTCTACCAAGCAATTAACATCTATCTTAAG GTACATACTGACCTGAGCAAGGCAGACAAGAAGCGTCTGTGTGGGATTCTAEST: gi|193441554|gb|FK406875.1|FK406875
genomic: CCGGGAAGATCATGATGATCTCTACCAAGCAATTAACATCTATCTTAAGgtaaagtacc ... gcatgaacagGTACATACTGACCTGAGCAAGGCAGACAAGAAGCGTCTGTGTGGGATTCTA
EST: CTCTACCAAGCAATTAACATCTATCTTAAG GTACATACTGACCTGAGCAAGGCAGACAAGAAGCGTCTGTGTGGGATTCTA
genomic: CTCTACCAAGCAATTAACATCTATCTTAAGgtaaagtacc ... gcatgaacagGTACATACTGACCTGAGCAAGGCAGACAAGAAGCGTCTGTGTGGGATTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCAGGTATCAAAGTTTGTGTCTCTTGCTGAAACTGTGCCCAGTATTGCCCGGGAAGATCATGATGATCTCTACCAAGCAATTAACATCTATCTTAAGgtaaagtacccgtataacacctgcagtcacttgtttagttttcgtcgtcccttgctttaatgctggaaaattttacgtgaaaaaaaaatcaagtattagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa