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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagtatagtatttaattacattgaatcatttcagatgatgtgataagttttgtttagccgctctgtgttatcttgtcgttggtggaaacccgaa...

Basic information

species Glycine max
transcript GLYMA17G00740.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00740.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 4
GAATGCACACCAACACATAGAGGAGGAAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagtatagtatttaattacattgaatcatttcagatgatgtgataagttttgtttagccgctctg--tgttatcttgtcgttggtggaaacccgaa
|| ||||     ||| | | ||| |||   |||||||| ||||||| ||||||  ||||||||||||| || || ||||||||||||||||| |   |||  |||| |||  ||    | |  |  ||| ||||  |     |||| |        ||  ||  |   | |  ||  | ||    |  |
GAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAAgtatgctg--ataccattttatttaatcatgttaaattggattatgttcttgtacttgtatgatgcacttgattgcaaaactttgctttctcgatgtgcaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193420877|gb|FK385830.1|FK385830
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTT
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTT
EST: gi|298182122|gb|HO026297.1|HO026297
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATAT
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATAT
EST: gi|209697566|gb|BW660573.1|BW660573
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|18735074|gb|BM528549.1|BM528549
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|213607081|gb|DB966986.1|DB966986
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|192317031|gb|FK007826.1|FK007826
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|11412572|gb|BF424583.1|BF424583
EST:     CTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: CTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|213587960|gb|DB957433.1|DB957433
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|209722848|gb|BW682907.1|BW682907
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|151404558|gb|EV274372.1|EV274372
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTC
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTT-GAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTC
EST: gi|192319504|gb|FK009486.1|FK009486
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|192317030|gb|FK007825.1|FK007825
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|254340112|gb|GR858237.1|GR858237
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
EST: gi|209704179|gb|BW664797.1|BW664797
EST:     ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA                         TTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG
genomic: ATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAAgtatgttagt ... tcatttgcagTTGAGGAACTTGGTTTGGGCAACATCAAAGCATGATGCATATCTTGTTTCG