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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAAGGAATCCCAGTTGTATTCATTTCAGCATTGGAGGGAAGGGGCAGGACCACTGTCTTGAATCAGGTCATCGAAACATATGAAAAATGgtgttcaagattacctacagctcgtctaaaccgttggttgcaaaag

Basic information

species Glycine max
transcript GLYMA17G00640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0022g01890.t01 (Vitis vinifera), 5'ss of exon 8
GTAAAAGGAATCCCAGTTGTATTCATTTCAGCATTGGAGGGAAGGGGCAGGACCACTGTCTTGAATCAGGTCATCGAAACATATGAAAAATGgtgttcaagattacctacagctcgtctaaaccgttggttgcaaaag-----------------------------------------------------------------------------------------
                                      ||||||||| || |   ||||  ||   |||||||| || ||||||||||||||||||| ||||||  | || |||||||| |||||||||||||  |||                                                                                         
--------------------------------------GGGAAGGGGAAGAATATCTGTGATGCGCCAGGTCATTGATACATATGAAAAATGGTGTTTAAGATTGTCAACTGCTCGTCTTAACCGTTGGTTGCGCAAGgtcagtatgacaataatccctttagtcctgcccatccttcaaatatgcaagttgggttttaatctctctttcgctttgcttctctctag

upper sequence: GLYMA17G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0035g02010.t01 (Vitis vinifera), 5'ss of exon 2
GTAAAAGGAATCCCAGTTGTATTCATTTCAGCATTGGAGGGAAGGGGC--AGGAC---CACTGTCTTGAATCAGGTCATCGAAACATATGAAAAATGgtgttcaagattacctacagctcgtctaaaccgttggttgcaaaag--------------------------------------
      ||  |    | |||    |||    |||  ||   | || |   | |||   ||  | || |  | |     | |   || | |  || |  ||   |  ||  | |  ||  |  |  | || |    |    |||                                      
-----TGGGTTTTGGGGTGTGACAATTGATACATATGAAAAATGGTGTTTAAGACTGTCAACGGCTCGTCTTAACCGTTGGTTGCACAAGgtaagta-tgacaataatctcttttagtcctgcccatccttcaaatatgtaagttgggttttaatctgtctttcactctgcttctctctag