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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTGgtaagcccattataatattctatgttgctcccttcctttatgcttacattacatgtattggcatcatgaaacttaatctctttgttctgttctaaaattctacag

Basic information

species Glycine max
transcript GLYMA17G00480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 4
GTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTGgtaagcccattataatattctatgttgctcccttcctttatgctt-acattacatgtattggcatcatgaaacttaatctctttgttctgttctaaaattctacag
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GTGCTCTTCGGCATTCTCTACAGGATAGGCTTAGTAAGAGTTCATCAGGCAAGAGTCGTGATGAAATATATCTGAAGCTTCGCACTAGTACAGgttggtgcatgatataatt--gcattgtttgttttctttgtgaaggattttatacctccttgagttgtaggtttggttgttttaattctttgccttggtttt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318683|gb|GR828627.1|GR828627
EST:     ATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTG                         CGCCTCCATTGAAATTGATTGACTTGCCTGGATTGGACCAGCGGATAGTGG
genomic: ATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTGgtaagcccat ... aattctacagCGCCTCCATTGAAATTGATTGACTTGCCTGGATTGGACCAGCGGATAGTGG