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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaattatctcctgttacacccattatatttttcctctccttgacttctagtttcttttcctttctaatannnnnnnnnnnnnnnnnnnnnnnn...

Basic information

species Glycine max
transcript GLYMA17G00250.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396313|gb|AI495310.1|AI495310
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|151409763|gb|EV279571.1|EV279571
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|254326666|gb|GR832818.1|GR832818
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|298184274|gb|HO029487.1|HO029487
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|298166707|gb|HO010146.1|HO010146
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|192300665|gb|FG991077.1|FG991077
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GGAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|192326423|gb|FK015925.1|FK015925
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|298178229|gb|HO023964.1|HO023964
EST:     TTCAGTTATGGACCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|7795909|gb|AW781306.1|AW781306
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|58022692|gb|CX709433.1|CX709433
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: gi|15286015|gb|BI469906.1|BI469906
EST:     TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG                         GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG