Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag

Basic information

species Glycine max
transcript GLYMA16G34510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag
|||||||||||||||||| || || || || || |||||||| || || |||||| | ||||||||||| || || |||||||| ||||||||||||||||||||            | || ||   |    ||    ||    |  |||||  ||||   ||| |  ||||| | ||   |   | |    | | |                                 
GTTAATAGTATGTGAACTTCTCAAGGCAAACTTGTATGAGTTCCAAAAGTTTAATAGGGAATCAGGGGGAGAGGTTTATTTCACTATGCCAAGATTGCAGgttagc---------caacatctttactactcatcagttttatgta-tgttttcactgc--tctctcattttc-ttctaaatcaaaatattgtgcag---------------------------------

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag
| |||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||  |||||||||| || ||||| ||||||||||||||||| ||||||||| || |          | | |  || | |||  |  |    ||| | | |||| |  |||   |  | |     ||||  |   || |  ||| |                                 
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtcc--------actttatcattaccatacatcatagatatg-tatatgta-tccgattcctgatct-----ctttgggaccgttctgtacag---------------------------------

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag
| |||| ||||||||||| ||||| |||||| |||| || || |||||||||||  |||||||||| || ||||| ||||||||||||||||||||||||||| || | |     | ||      | |  |||  ||  ||| |  | |   || ||    ||||| |  |   ||  | | |                                               
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgt-ccgcttcatcattaacattcttaatagatatgtataaatccga--gttctaatctctttgggatcgttctgtacag-----------------------------------------------

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgtta--gtgctgtgctgtgata-tgttctttctatatttacttatcatgctgtt-tgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag
 ||||| ||||| ||||| || || || || || ||||||||||| ||||||||| ||||||| || ||||| || || ||||| |||||||||||||||||||  | | |    | | | | || | | | | | |     |  ||||||| | ||||   || | || | || |  ||  | | |                                               
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgt--tctgtgcag-----------------------------------------------

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 2
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctg--tgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag
 || || || ||||| |||||   ||| ||| | || ||||||||||| |  || ||||| || || ||||| || |||||||||||||| |||||||||||  |   ||| ||   | | | ||   || |||   ||  | ||      |||| |                                                                           
ATTTATCGTCTGTGAGCTACTACGAGCTAATCTGTACGAGTTTCACAAGTACAACCGAGATTCGGGAGGGGAGGTCTATTTCACGATGCCTAGATTGCAGgtaggaagtgttctagctcacaggtggattttattcgtaactctcgaaac-tttgcag--------------------------------------------------------------------------

upper sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ25132 (Selaginella moellendorffii), 5'ss of exon 2
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctg--tgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag
 || || |||||||| |||||   ||| ||| | |||||||||||||| |  || ||||| || || ||||| || |||||||||||||| |||||||||||  |   ||| ||   | | | ||   || |||  |||    ||      |||| |                                                                           
ATTTATCGTATGTGAGCTACTACGAGCTAATCTGTATGAGTTTCACAAGTACAACCGAGATTCGGGAGGGGAGGTCTATTTCACGATGCCTAGATTGCAGgtaggaagtgttctagctcacaggtggattttattcttaacactcgaaac-tttgcag--------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24137018|gb|BU927528.1|BU927528
EST:     TTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAG                         TCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA
genomic: TTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctg ... atgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA
EST: gi|6567092|gb|AW234719.1|AW234719
EST:     TTAATCGAGAATCANNNNNNNAAGTGTATTTCACGATGCCAAGATTGCAG                         TCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA
genomic: TTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctg ... atgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA
EST: gi|193473282|gb|FK438677.1|FK438677
EST:     TTAATCGAGAATCA-GGGGGGAAGTGTATTTCACGATGCCAAGATTGCAG                         TCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA
genomic: TTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctg ... atgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGA