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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGGTGGCCAGCTATGGGGGACTGATGTTTACACTTATGACTCAGATCTTGTTGCTGgtatgtgttgcaaaaaggttgcagctagctttttatttctagggactggacttgatgtgtttgaaatcagtactgattttgcatttttgttgcatag

Basic information

species Glycine max
transcript GLYMA16G33300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33300.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 4
GTTAGAGGTGGCCAGCTATGGGGGACTGATGTTTACACTTATGACTCAGATCTTGTTGCTGgtatgtg---ttgcaaaaagg---ttgcagctagctttttatttctagg-gactggacttgatg-tgtttga-aatcagtactgattttgcatttttgttgcatag
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GTCAGAGGCGGCCAATTATGGGGGACAGATATATACACTGATGACTCAGATCTTGTTGCTGgtatgtggtgttacaaaggagagtctagagcttatactgcatttgtagatgatagaacttagtggtatgccataacttatattaatgctgcattattgtctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298007|gb|FG993241.1|FG993241
EST:     CCAGCTATGGGGGACTGATGTTTACACTTATGACTCAGATCTTGTTGCTG                         TTCTCATGCATACAGGTTATTGTCGCCCAACAGCTTCTCCACCTCCCATGG
genomic: CCAGCTATGGGGGACTGATGTTTACACTTATGACTCAGATCTTGTTGCTGgtatgtgttg ... tgttgcatagTTCTCATGCATACAGGTTATTGTCGCCCAACAGCTTCTCCACCTCCCATGG