Sequence
atgc intronic sequence ATGC exonic sequenceAGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTgtatgaaccatgacatgatcttgtttctatttacttatttatgtgtcgttcttttcataccctgctggagtttcccatgatacaaatgctgatcacatgtttctctttgtttaatttggaag
Basic information
species | Glycine max |
transcript | GLYMA16G32830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G07180.1 (Arabidopsis thaliana), 5'ss of exon 4
AGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTgtatgaaccatgacatgatcttgtttctat-ttacttatttatgtgtcgttcttt-tcataccctgctggagtttcccatgatacaaatgctgatcacatgtttctctttgtttaatttggaag
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AGACTTGCAAGGAAATAAATTGGGTGGTCAAATTCCAGATGAGATTGGAAACTGTGTTTCTCTTGCTTATGTgtaagttttgtttgatgcttgtagtttcatgttaatgagaacttaatctatctctattatataat-caaaaacctttcttgtttcag-------------------------------------
upper sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G62230.2 (Arabidopsis thaliana), 5'ss of exon 4
AGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTgtatgaaccatgacatgatcttgtttctatttacttatttatgtgtcgttcttttcataccctgctggagtttcccatgatacaaatgctgatcacatgtttctctttgtttaatttggaag
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AGACTTGCAAGGTAATAAACTAGCAGGTCAAATTCCAGATGAGATTGGAAACTGTGCTTCTCTTGTTTATCTgtaagtcttattaaact-tgtttttttgagttttcaattttcatgtctttagttttg----acgtccatatcctctgttgtacag-------------------------------------
upper sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 3
AGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTgtatgaacca-tgacatgatcttgtttctatttacttatttatgtgtcgttcttttcataccctgct----ggagtttcccatgatacaaatgctgatcacatgtttctctttgtttaatttggaag----------
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AGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTTgtatggtcctctcaccctcatttgtttttttgtctcttttttattttcattttttaattagccttttttcggttgtttctgtttgcgctagagttgcttgttttgtggtttacaaagggtttgcatgtgtaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18039577|gb|BM307871.1|BM307871EST: ACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCT GGATTTGTCTGATAATCAACTATATGGTGATATACCTTTCTCCATATCAAA
genomic: ACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTgtatgaacca ... aatttggaagGGATTTGTCTGATAATCAACTATATGGTGATATACCTTTCTCCATATCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTgtatgaaccatgacatgatcttgtttctatttacttatttatgtgtcgttcttttcataccctgctggagtttcccatgatacaaatgctgatcacatgtttctctttgtttaatttggaag
- - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT